Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01203 ATGGGGTGTTTTCTTGCTTGTTTCGGGTTTCATAAGCATCGAAAGAAACGCCGACCACCGGCCAATGGAGTCACAATTGCCAACCAAATACATCTAAGCTATGAGCCTTTAGATTCCTCCCGAATTACAACATGTGATAACAACGAGAAACCTGAGATTCAAAATTCTAAACCAAGATCCTATTTCCTTTTCAGGGATAGAGCTAAGGAGCAGCCTTGGGTCAAAATCAGGAAGAAAGTTAGCTTTAATCTAAACGTCCAGAGCTATGAACCTGTCCCAGATGATCACTATTTCCTAGAGAGTGATGAAGAGGTAAAAACTGAAGAACATTGCCAAGAAACAACAGCTAGAATTGATTCCACTCCACTCCCAAACAATGCATTTACAGCCTCCAATTCAGGAAATTACCCTCAAAACCACAGATACCAGAATTTTGAGGATAGTTATGATGATGAAGAAGAGGATTCTGGAGATGGTGAGAGTGATTTGGATGATAGTGAAATTGATGAAAATCATGATGAGAACAATGATGAATTTAAATCATGTGAACTGGAAACTAGTAGTATTGAAGACAGGAGCCAGCAAGTTCATTCTGTTCTAAAACCAATAGAAAATCTTACTCAATGGAGGACAGCTAAAGCAAAAGCAGGGTCAATCACTAAGCATCAGATGCAAAACAAGATTAAGACATCAAAGCAGGAAAGTTCTCCAGTAATTTTCAGTTCAAACACAAGTTCAATTCAACCACCATTGAAGTCAAGATCAAATTTGTGCTTACCTGATACTCAAATGCAAGAAAATGATCTGGTGCATTCAAGCCTCTCAGATTGGTTGGTCAGAACTGCATAA 849 38.87 MGCFLACFGFHKHRKKRRPPANGVTIANQIHLSYEPLDSSRITTCDNNEKPEIQNSKPRSYFLFRDRAKEQPWVKIRKKVSFNLNVQSYEPVPDDHYFLESDEEVKTEEHCQETTARIDSTPLPNNAFTASNSGNYPQNHRYQNFEDSYDDEEEDSGDGESDLDDSEIDENHDENNDEFKSCELETSSIEDRSQQVHSVLKPIENLTQWRTAKAKAGSITKHQMQNKIKTSKQESSPVIFSSNTSSIQPPLKSRSNLCLPDTQMQENDLVHSSLSDWLVRTA 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19255655 19256945 - Lsi09G012030.1 Lsi09g01203 670816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01203 282 MobiDBLite consensus disorder prediction 116 143 - -
Lsi09g01203 282 MobiDBLite consensus disorder prediction 173 187 - -
Lsi09g01203 282 PANTHER FK506-BINDING NUCLEAR-LIKE PROTEIN 1 281 - -
Lsi09g01203 282 MobiDBLite consensus disorder prediction 103 195 - -
Lsi09g01203 282 PANTHER ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT 1 281 IPR039300 GO:0007142
Lsi09g01203 282 MobiDBLite consensus disorder prediction 148 172 - -
Lsi09g01203 282 MobiDBLite consensus disorder prediction 214 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01203 - - - csv:101208012 424.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01203 Lsi-Chr9:19255655 Lsi09g01794 Lsi-Chr9:26681818 1.36E-06 dispersed
Lsi05g01045 Lsi-Chr5:17970386 Lsi09g01203 Lsi-Chr9:19255655 1.02E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g766 . . . . . . . . Cmo08g01036 . . . . . . . . . . . . . . . Cla06g00689 Cam06g0740 Cec06g0747 Cco06g0758 Clacu06g0731 Cmu06g0715 Cre06g1490 . . . . . . Chy05g00299 . . . . . . . . . Sed09g0641 . . Cma08g01067 . Car08g00942 . . Cpe17g00210 Bhi12g01573 Tan06g2379 Cmetu05g0044 Lac12g2129 Hepe03g0305 . Lcy13g0401 . . . . . . . Lsi09g01203 . . Cme05g00605
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013251 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01203 Lsi_Chr09 FPKM 40.402817 42.804962 42.033604 45.753262 28.40889 24.033127 26.185917 26.699142 26.988108 29.840328