Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01208 ATGGAAACACATAAAAGTTTCACTCTTTTAAGAAATCCAAAACATATGGTATCATCAATTGCAGAGATTGGAGCACGCCATGTTGTTACTAGATTTCTTGCAAGATATATATCTATTGGATCATTAACTATAGTGGAGGAAGGTGGTACAATATTTACCTTTGAGGGAACAAATAATTTTTCCCCGAAGGTTACTTTAAAAGTTCACAACCCTCAATTTTATTGGAAGATTATGATGCATGCTGATATAGGCCTTGCAAATGCATATATTAATGGAGACTTTTCTTTGGTCGATAAAGATGAAGGTCTTCTTAATCTTATATTGGGGATGGTGGTCTCCTCCAATATTTACAGCTACTATTGCATATGCAAAAGCAATGAACTTTTTTCTCTTTTCTTGGATGATACAATGACATACTCTTGCGCCATTTTTAAGATGGAGGATGAAGATTTGAAAGTTGCACAAATGAGAAAAATCTCTGTTCTGATAGAAAAGGCAAGAACAAATAAAAACCATCAAGTGTTAGATATTGGTTGTGGTTGGGGAAGCCTAGCTATTGAAATTGTAAAGCAAACTGGATTGGGATGCTTGAAGCTGTTGGACATGAATTTATGGAAGACTTTTTTGGAACCTTTCGTATCGATGCCAGACGAGCGTTACGATGAATATCGACTAAGTTCGGATTTTATTAAAGATGTGGAACACTTGGAAAACATTGGAATTCATTACTATCAAACATTGAGATGTTGGAGAAAGAATTTCCTAAATAATAAGAGTAAAGTACTCGAACTTGGTTTTGATGAAAGATTCATAAGGACTTGGGAATACTATTTTGATTATAGTGCTGCTGGTTTGAAATCGCGCACTTTGGGAGATTATCAGATTGTGTTTTCAAGGCCTGGTAATGTTGCAACATTCAACGATCCATATCAAAGAATACCTTCCGTATATTAA 954 34.91 METHKSFTLLRNPKHMVSSIAEIGARHVVTRFLARYISIGSLTIVEEGGTIFTFEGTNNFSPKVTLKVHNPQFYWKIMMHADIGLANAYINGDFSLVDKDEGLLNLILGMVVSSNIYSYYCICKSNELFSLFLDDTMTYSCAIFKMEDEDLKVAQMRKISVLIEKARTNKNHQVLDIGCGWGSLAIEIVKQTGLGCLKLLDMNLWKTFLEPFVSMPDERYDEYRLSSDFIKDVEHLENIGIHYYQTLRCWRKNFLNNKSKVLELGFDERFIRTWEYYFDYSAAGLKSRTLGDYQIVFSRPGNVATFNDPYQRIPSVY 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19330717 19346536 - Lsi09G012080.1 Lsi09g01208 670821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01208 317 Gene3D Vaccinia Virus protein VP39 112 200 IPR029063 -
Lsi09g01208 317 PANTHER ARSENITE METHYLTRANSFERASE 233 316 IPR026669 -
Lsi09g01208 317 PANTHER ARSENITE METHYLTRANSFERASE 5 112 IPR026669 -
Lsi09g01208 317 Gene3D Vaccinia Virus protein VP39 208 299 IPR029063 -
Lsi09g01208 317 PANTHER METHYLTRANSFERASE, PUTATIVE-RELATED 233 316 - -
Lsi09g01208 317 PANTHER METHYLTRANSFERASE, PUTATIVE-RELATED 5 112 - -
Lsi09g01208 317 Pfam Mycolic acid cyclopropane synthetase 124 191 - -
Lsi09g01208 317 Pfam Mycolic acid cyclopropane synthetase 232 290 - -
Lsi09g01208 317 PANTHER METHYLTRANSFERASE, PUTATIVE-RELATED 115 193 - -
Lsi09g01208 317 PANTHER ARSENITE METHYLTRANSFERASE 115 193 IPR026669 -
Lsi09g01208 317 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 302 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01208 K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] - rcu:8265756 345.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01208 Lsi-Chr9:19330717 Lsi09g01211 Lsi-Chr9:19405474 2.23E-97 dispersed
Lsi09g01208 Lsi-Chr9:19330717 Lsi09g01209 Lsi-Chr9:19352794 7.18E-06 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g758 Blo01g00298 . . . . . . Bma05g01249 . Cmo17g00148 . . . . . . . . . . . . . . Cla06g00686 Cam06g0737 Cec06g0744 Cco06g0754 Clacu06g0728 Cmu06g0712 Cre06g1487 . . . . . Csa02g01039 Chy05g00303 . . . . . . . . . . . . . Cma17g00149 . Car17g00131 Cpe12g00126 . Bhi12g01580 . . . . . . . . . . . . . Lsi09g01208 . . Cme05g00595
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000328 0 12 1 1 1 5 7 9 6 3 5 6 4 6 8 3 7 2 2 5 3 2 3 6 5 10 3 4 3 2 134
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01208 Lsi_Chr09 FPKM 20.883074 24.665384 86.808289 83.654747 203.82254 200.31575 198.401123 31.233467 32.906048 33.670193