Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01218 ATGCAGACTGGTGACCTGGACAAGTCGGTGCCGGCAGTAAATAAAATCAGTGATGTTGTCGAGGACTCACCAAACAAGATTATCGTTGCTGGGATCTCAAATAGAATATCATCTGAAATGCTTAGGGATATTGTTACTGCATTTGGACGTTTGAAGGCCTATCACTTTGAGATGAACGATGATCTTAACGAACCTTGTGCCTTTCTGGAGTACGTTGACCAATCAATTGTGTCCAAAGCTTGTGCTGGTCTAAATGGTATGAAGATTGGAGGGAAAGTACTAAAAGTGTTTCCAGCTATTCCTTTTGCATCAACGGAACGTGATGGATGTCTACCATGTTATGGGATCCCAGAGCATGTAAAACCTCTTCTTCAACAGCCATCAGTAGTGTTAAAAGTTAATAATGTGGTGTTTTCTTTTTGGACCCAGTTTAATGCAGATGTCCTCCCAGTACTCTCTGAGTCAGATATTGACGAAGTTCTTGAAGATATTCGGTTTGAATGTGCTAGGTTTGGGACAGTTAAATCCATGAATTTTGTAAAGCCATGCAATGGCTGTGTCAGTGCTGAAGAAGAATACAAGAATATTAGTGATGTCACTGATGTTGAGATCAAACATGAGATTCAGGAAAACAGCACAATGGTGATTTCAAGAAACAGTAATGATCTTGAAGATAACAATGCTAACCTTGATAATTGCCCCAACGATACCAATCAGAAGCAGGGTAATTGCCCTGGCAATGGTAGACATCAAGACAAAGGTGTGGAGGACAAATTGTGTCAAATGGGTAATGATGATGCTGCATTTTTTGAAGTCGTAGCTTGTGAGAATCCTTCAGAAAGAATCCCTCGAGGACTCTCTGAACAGCGAAGCAGCCCAGAAAATGAACTTCAGAATGCAAAAGTAGCTGAAATAGTTGAAACTGATGAAACTGGCTCGGATAAGAAATTGGTGTGTCTAGATGATTCATCTATGGTGGTCGCTGATAATGAGAAGAAAGCTCTAAATGGAATGGATCCCATGGTGAGAACAGGTTCTGATGCATCTGATAAAAGCGCAAAGGACCCTAATAATAGTCTAGAAAGTTTATTTGTGTTGGGGAGTGTCTTTGTTGAGTTTGGTAGAATGGATGCCTCGTGTATGGCTGCACATTCTTTACATGGTAGGCTTTATGATGGACAAGAGATTAGCATCGAGTACATTCCCTATGATCTCTATCGGAAGAGGTGCAAGGATCTAGGTTATGGACATGAAAGATTTTCG 1263 40.78 MQTGDLDKSVPAVNKISDVVEDSPNKIIVAGISNRISSEMLRDIVTAFGRLKAYHFEMNDDLNEPCAFLEYVDQSIVSKACAGLNGMKIGGKVLKVFPAIPFASTERDGCLPCYGIPEHVKPLLQQPSVVLKVNNVVFSFWTQFNADVLPVLSESDIDEVLEDIRFECARFGTVKSMNFVKPCNGCVSAEEEYKNISDVTDVEIKHEIQENSTMVISRNSNDLEDNNANLDNCPNDTNQKQGNCPGNGRHQDKGVEDKLCQMGNDDAAFFEVVACENPSERIPRGLSEQRSSPENELQNAKVAEIVETDETGSDKKLVCLDDSSMVVADNEKKALNGMDPMVRTGSDASDKSAKDPNNSLESLFVLGSVFVEFGRMDASCMAAHSLHGRLYDGQEISIEYIPYDLYRKRCKDLGYGHERFS 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19597787 19603277 + Lsi09G012180.1 Lsi09g01218 670831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01218 421 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 409 - -
Lsi09g01218 421 Gene3D - 21 74 IPR012677 -
Lsi09g01218 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 101 IPR000504 GO:0003723
Lsi09g01218 421 Gene3D - 75 96 IPR012677 -
Lsi09g01218 421 SUPERFAMILY RNA-binding domain, RBD 118 409 IPR035979 GO:0003676
Lsi09g01218 421 PANTHER RNA-BINDING PROTEIN 2 409 - -
Lsi09g01218 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 95 IPR000504 GO:0003723
Lsi09g01218 421 Gene3D - 293 414 IPR012677 -
Lsi09g01218 421 SUPERFAMILY RNA-binding domain, RBD 19 103 IPR035979 GO:0003676
Lsi09g01218 421 SMART rrm1_1 26 97 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01218 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - csv:101213128 646.351
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01218 Lsi_Chr09 FPKM 392.162933 444.747925 95.908257 97.682167 72.503609 64.229584 72.324265 283.015778 280.649231 268.336304