Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01221 ATGTCTTCTATAGTCACCGATGCTTGGAAAGGATATCTGCTGCAACTTCAGAAGAATCCTCTTAGAACTAAGGCAATCACTGCTGGGGTTTTAGCTGGGGTCAGCGACACAGTGGCCCAGAAGATTTCTGGGATCAAAAAGCTTCAATTCAGACGATTGCTTCTTTTAATGCTCTATGGCTTTGCTTATGCTGGACCGTTTGGGCACTTTTTGCACAAATTGATGGATAGAATTTTCAAGGGGAAGAAAGGAAATACTACTGTTGCAAAGAAGTTCTGGCCCATCGTTGGTTGGGTGAATTACCAGTACATGCCTCTGCAGTTTCGAGTGATATTTCATAGCTTTGTTGCTTCATGCTGGGGAATCTTTCTGAATCTGAAAGCAAGAACAGTTGCGGTGAAGGCAGCATAA 411 43.31 MSSIVTDAWKGYLLQLQKNPLRTKAITAGVLAGVSDTVAQKISGIKKLQFRRLLLLMLYGFAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKFWPIVGWVNYQYMPLQFRVIFHSFVASCWGIFLNLKARTVAVKAA 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19624481 19631369 - Lsi09G012210.1 Lsi09g01221 670834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01221 136 Pfam Mpv17 / PMP22 family 91 125 IPR007248 GO:0016021
Lsi09g01221 136 PANTHER PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 1 91 IPR007248 GO:0016021
Lsi09g01221 136 PANTHER OS08G0566900 PROTEIN 90 135 - -
Lsi09g01221 136 PANTHER PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 90 135 IPR007248 GO:0016021
Lsi09g01221 136 PANTHER OS08G0566900 PROTEIN 1 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01221 K13347 PXMP2, PMP22; peroxisomal membrane protein 2 - csv:101206548 230.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00443 Lsi-Chr1:3697646 Lsi09g01221 Lsi-Chr9:19624481 3.31E-14 dispersed
Lsi09g01221 Lsi-Chr9:19624481 Lsi11g00259 Lsi-Chr11:2616532 5.04E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g742 Blo01g00296 Blo12g00142 Bda03g01088 . . . Bma04g01013 Bma05g01244 . Cmo17g00151 . . . . . . . . . . . . . . Cla06g00678 Cam06g0728 Cec06g0737 Cco06g0745 Clacu06g0720 Cmu06g0704 Cre06g1476 . . . Cone4ag0345 . Csa02g01047 Chy05g00310 . . . . . Bpe05g01099 . . . Sed09g0659 . . . Cma17g00152 . Car17g00134 Cpe12g00129 . Bhi12g01599 Tan06g2391 Cmetu05g1497 . . . Lcy13g0390 . . . . . . . Lsi09g01221 . . Cme05g00584
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001951 2 2 2 3 2 2 2 1 2 1 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 8 4 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01221 Lsi_Chr09 FPKM 17.450739 21.151539 14.413852 11.002891 13.035514 11.604499 10.378671 17.188065 15.959899 15.376092