Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01223 ATGGGTCTTAAAGATCTTCGTCTCAAGCTCAAGGGGCTTCGATTGGGAAGGTTTCTGATGAGGAATACGAGGAAGAAACGACGGGGGGCGGCGGCGGCGGTGAGTAAGGCGTCGTGGATGGCGCCGGTGAGCCATGGGTATCATGTGGTGGCGGATCAGTCGTATTCGAGAATTTGGGAAGAAGAATCGGATTACGACTCTGTTGTGGTTCAGAGAGAACAGATGGAAGCGATTGAGTTATGGTTTTTTGGGGTTTTTGATCCTCAAATTGGTGATAAAGTGATCAAGTTCATGCAAACCCATTTCTTTGACAAGAACTTTCAAGAGTCTGAAGTAAAAGGGAAAGGAAGAGAGGCAATGAAGAAAGCACATCTGAGTGCAAGAACAAAGGTGAGAGAAGCAAAGGAAGGGAAGGAGTCATGGAAAATGGGTTCATCTTCAGCATTGGTCATTGATGGAGATAAATTGGTGATTGCTAGCATGGGTGACTATAGAGCCATTGTATGTGAAGATGGTCTTGCTCACCAAATAAGCTGTGATCAAGATTCAACCACCCAACGTTGGCCTCGGAGATTATTGCTCGGTGATGAAGAACCAAGAGGCTGTGAATCTGATAAGACACATGGAAGACCCACAAGCAGCAGCAGAGTGTTTGGCGAAGGAGGCCTTTACCAGAATGAGCAAAAGTAG 690 46.38 MGLKDLRLKLKGLRLGRFLMRNTRKKRRGAAAAVSKASWMAPVSHGYHVVADQSYSRIWEEESDYDSVVVQREQMEAIELWFFGVFDPQIGDKVIKFMQTHFFDKNFQESEVKGKGREAMKKAHLSARTKVREAKEGKESWKMGSSSALVIDGDKLVIASMGDYRAIVCEDGLAHQISCDQDSTTQRWPRRLLLGDEEPRGCESDKTHGRPTSSSRVFGEGGLYQNEQK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19652763 19655777 + Lsi09G012230.1 Lsi09g01223 670836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01223 229 MobiDBLite consensus disorder prediction 192 210 - -
Lsi09g01223 229 ProSiteProfiles PPM-type phosphatase domain profile. 64 229 IPR001932 -
Lsi09g01223 229 Pfam Protein phosphatase 2C 80 185 IPR001932 -
Lsi09g01223 229 SUPERFAMILY PP2C-like 65 221 IPR036457 -
Lsi09g01223 229 MobiDBLite consensus disorder prediction 211 229 - -
Lsi09g01223 229 MobiDBLite consensus disorder prediction 192 229 - -
Lsi09g01223 229 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 44-RELATED 6 206 - -
Lsi09g01223 229 Gene3D - 48 227 IPR036457 -
Lsi09g01223 229 PANTHER ALPHABET, ISOFORM E-RELATED 6 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01223 K19704 PTC1; protein phosphatase PTC1 [EC:3.1.3.16] - csv:101212891 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01223 Lsi-Chr9:19652763 Lsi11g01704 Lsi-Chr11:25194324 6.42E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g728 . . . . . . . . Cmo08g01051 Cmo17g00153 . . . . . . . . . . . . . . Cla06g00676 Cam06g0726 Cec06g0733 Cco06g0742 Clacu06g0717 Cmu06g0702 Cre06g1473 . Cone15ag0169 . . . Csa02g01050 . . . . . . . . . . Sed09g0664 . . Cma08g01076 Cma17g00154 Car08g00949 Car17g00137 Cpe12g00132 Cpe17g00201 Bhi12g01602 Tan06g2397 Cmetu05g0571 . . . Lcy13g0387 . . . . . . . Lsi09g01223 . . Cme05g00581
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008624 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01223 Lsi_Chr09 FPKM 3.684882 3.294618 4.568475 5.180629 13.226812 12.592527 12.910286 6.935728 6.467986 5.709012