Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01229 ATGGAAGCTACTAGGTGTTGGTTTAATAAGTTTAGGTCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCAAGAGCACCAACCAGTGAAGATGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTATATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTCAAGCATCTAGAGAAGAAGGAGACAGAGTATATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACAGAAGATGAGGCTCGGTTTTATGTTGGCGAAACAGTTTTAGCTATCGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGATGGCCATATGAAATTATCCGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCTCTTCAAAGTGATGGACGTCCTGTGCCATCAAAACGCACACAACAGGAACAACTGCAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCCCCGGAAGTTTTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTACGAAATGCTTGTGGGATTCCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACCCATTTGAAATTTCCAGAAGAAGCAAAGCTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAATGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACGCAATTCAAACTTCATCAAGATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTCGTAGGTTATACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGATAACGAATCTGCAATGGCTAATCAACCTGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAACTAGAAGTCCCCGAGAAACCGATGAGTGCCAATGAGAAACATTCATGA 1599 41.09 MEATRCWFNKFRSKDKPKPSTNKESTGNARDASRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVPSKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSRSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIDNESAMANQPVQGSFLKLLPPQLEVPEKPMSANEKHS 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19708524 19718309 - Lsi09G012290.1 Lsi09g01229 670842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01229 532 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 495 - -
Lsi09g01229 532 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01229 532 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Lsi09g01229 532 MobiDBLite consensus disorder prediction 7 21 - -
Lsi09g01229 532 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Lsi09g01229 532 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi09g01229 532 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi09g01229 532 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 41 495 - -
Lsi09g01229 532 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01229 532 MobiDBLite consensus disorder prediction 1 50 - -
Lsi09g01229 532 MobiDBLite consensus disorder prediction 22 50 - -
Lsi09g01229 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lsi09g01229 532 Gene3D Phosphorylase Kinase; domain 1 108 204 - -
Lsi09g01229 532 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lsi09g01229 532 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Lsi09g01229 532 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01229 532 Coils Coil 68 102 - -
Lsi09g01229 532 CDD STKc_NDR_like 117 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00049 Lsi-Chr1:586970 Lsi09g01229 Lsi-Chr9:19708524 8.69E-06 dispersed
Lsi02g02182 Lsi-Chr2:28306265 Lsi09g01229 Lsi-Chr9:19708524 0 dispersed
Lsi04g01409 Lsi-Chr4:21848408 Lsi09g01229 Lsi-Chr9:19708524 0 dispersed
Lsi06g00827 Lsi-Chr6:17574255 Lsi09g01229 Lsi-Chr9:19708524 3.73E-28 dispersed
Lsi08g01474 Lsi-Chr8:22869166 Lsi09g01229 Lsi-Chr9:19708524 0 dispersed
Lsi09g00549 Lsi-Chr9:5801276 Lsi09g01229 Lsi-Chr9:19708524 2.98E-82 dispersed
Lsi09g01229 Lsi-Chr9:19708524 Lsi10g01321 Lsi-Chr10:17417465 1.15E-49 dispersed
Lsi09g01229 Lsi-Chr9:19708524 Lsi06g00299 Lsi-Chr6:3436514 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83908 PF00069 Pkinase 8.90E-66 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01229 K08790 - csv:101205120 1055.05