Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01232 ATGGGGCAGCAACCGTCCAAAGATGAGCTTGTGTATCAGCGCGCTAGCAACGGCGATGTTGAAGGGATTAAGGCCCTTTCAGCAGAAGGTGCCGGCCTTGAGTGGGTTGATAGGGAAGGAAAGACTCCGTTGATTGTTGCCTGTACGAAACCAGAGCCTTATAACGTGGCGAAAACGTTGCTAGAACTCGGCGCCAATGTCAATGCGTATGCACCAGGCCGTAATGGTGGGACGCCATTGCACCATGCAGCTAGAAGAGGCTTGGAAAATACTGTTAAATTACTTATTTCTTACAGAGAATGCTCATTGTTGTTCAAATTTCCAGCAAATACTTCGATTTTTAATGATGCTTGCCAAACTGCATTGGAAGTTGCGAGAGCAGCAGGGCACAAGAATGTTGTTCGTGCTATTGAGAATCATATTTGTCTATTCTCTGGTTGGATGCGGGAATTTTATGGGCCGGAGTTTCTCGAAGTACTAGCTCCTCATCTCCTTTCACGGAAAGTCTGGGTAGTTATTTTACCTTGTGGTTCTCGAAATCCCATGAAGCCTGCTAAGTTGGAGCTTGCCATATATGCTAGCTTGCAGTTATATTTCATAATCCTGTCTCTAGAAAATGAATATGTGATTTGTGTGAAGATCATACACCCCCACCCCCAACCCCATCACAAAAATAATGGGAAAAATTATATGTATGTGTGTGTGTGTGTGTATAGAGAGAGAGAGAGAGAGAGAGTTCTGCCGGTCAGATCGTGTGTAACTTATGTGACTTCTATGCCATTTCCTCTATTCCATGCCTTTAAAAGATTCATAGAACTCCTAGTTATGGTATTCGTTTCTCTTCTAAAAAATATTAGGGGATTCTATATGTCTTGCTCATGTGTAGACTTTTTATTGTATGGACAGGATGCCCAACCTCGTCTAGTTATTCCATTGTGGAAATCGTGTTTAGAGGAACATAAGATACAGGAATCTGATCCATCTGTTGTCATTGTCGACAACACTCCAAACCTAGTCTCAAGAGGAGGAAGGAGGCGAAAACGGAGTTGTCACACCTCCTGGGAAGCCAGATGTCGATTTCGGAAATCAAAGACTGGACGCCTTAGACTTGCACCTGCTAATGAGTACGATAGACAACAACTTCAATGGTTTTGTGATGCTTGCAAAGGGATTCCTCAGCCAAAGAAAGTGATGGAAACAGTTTTATTAACACATATTGTACTCAAGCTATCAGTTTTGCAATATCTATATCGTCGTGGTTTAGTTCGAGCTATTCTTGAGAAAACAGTATTCTCTAAAATCGAGAATAGTTTTCTAACACCATTCCAACGAGGTCTCGGTATTACATGGTATATAGTCTCGATGATACAGTACTCATCAGTGGAGGTACAAACTGCATGTCTTACGTTTTCCTCTGTCTTCGAACCTGCAAGCCCAGTAAAGATATTGAATGTTGCTTTTGTGGGGCTGATGATGATATCAAGTACTGTGATGCAACCTACAGCTTGGCATAATCACCAGAGCCCGATCAACATTGCAACTGTACCTCCCGGTTCAGAAGATCCAGAGCTCATGATGGCCATAAATGCCTCTATTCAGTCAGCTATGCAGGAAAGTGGACAGCTTCATAATCCCTATTCATCAAGTTCTGAAGCAGGTGCCTCCAGTAGCAGTGCATTACCTCAACCTGTTCCTCCAAAAACAGGTTCTAGCAGATGGACAGTGCACGAAGCAAGCCACGGTTACAATCCAAGCCATTGCGCCGAAACACCGAATGACACTGTCCCTGTCATTCAGATGACACACCCTCCAAATGCAGCCCCCACAGCTCCACCCTTGGCAGCCAAAACTTTTGAGGCTAGCACAAGTACAGTTGACTACCCGTTGGTCGATTCTGAGCCCATAAACAACGTGCCATCTTCATCCATTGGGAACAAGGGGAAAGAAGGTAATGGCAACTCGACGTGTGTGATATGTTTGGATTCTCCAGTAGAAGGAGCCTGCGTCCCCTGTGGCCATATGGCTGGATGTATGTCTTGTCTAAATGAGATTAAAGCCAAGAATTGGGGCTGCCCAGTTTGTCGCACCAAGATCAATCAAGTCATAAAGTTGTATGTGGTTTGA 2124 44.11 MGQQPSKDELVYQRASNGDVEGIKALSAEGAGLEWVDREGKTPLIVACTKPEPYNVAKTLLELGANVNAYAPGRNGGTPLHHAARRGLENTVKLLISYRECSLLFKFPANTSIFNDACQTALEVARAAGHKNVVRAIENHICLFSGWMREFYGPEFLEVLAPHLLSRKVWVVILPCGSRNPMKPAKLELAIYASLQLYFIILSLENEYVICVKIIHPHPQPHHKNNGKNYMYVCVCVYRERERERVLPVRSCVTYVTSMPFPLFHAFKRFIELLVMVFVSLLKNIRGFYMSCSCVDFLLYGQDAQPRLVIPLWKSCLEEHKIQESDPSVVIVDNTPNLVSRGGRRRKRSCHTSWEARCRFRKSKTGRLRLAPANEYDRQQLQWFCDACKGIPQPKKVMETVLLTHIVLKLSVLQYLYRRGLVRAILEKTVFSKIENSFLTPFQRGLGITWYIVSMIQYSSVEVQTACLTFSSVFEPASPVKILNVAFVGLMMISSTVMQPTAWHNHQSPINIATVPPGSEDPELMMAINASIQSAMQESGQLHNPYSSSSEAGASSSSALPQPVPPKTGSSRWTVHEASHGYNPSHCAETPNDTVPVIQMTHPPNAAPTAPPLAAKTFEASTSTVDYPLVDSEPINNVPSSSIGNKGKEGNGNSTCVICLDSPVEGACVPCGHMAGCMSCLNEIKAKNWGCPVCRTKINQVIKLYVV 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19773050 19777987 + Lsi09G012320.1 Lsi09g01232 670845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01232 707 SUPERFAMILY RING/U-box 652 701 - -
Lsi09g01232 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 707 IPR013083 -
Lsi09g01232 707 MobiDBLite consensus disorder prediction 538 596 - -
Lsi09g01232 707 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 504 707 - -
Lsi09g01232 707 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lsi09g01232 707 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lsi09g01232 707 ProSiteProfiles Ankyrin repeat profile. 75 97 IPR002110 GO:0005515
Lsi09g01232 707 Pfam Zinc finger, C3HC4 type (RING finger) 654 701 - -
Lsi09g01232 707 ProSiteProfiles Zinc finger RING-type profile. 656 695 IPR001841 -
Lsi09g01232 707 ProSiteProfiles Ankyrin repeat region circular profile. 75 97 - -
Lsi09g01232 707 Gene3D - 4 144 IPR036770 -
Lsi09g01232 707 PANTHER ROLLING PEBBLES, ISOFORM B 504 707 - -
Lsi09g01232 707 PANTHER ROLLING PEBBLES, ISOFORM B 1 396 - -
Lsi09g01232 707 Pfam Ankyrin repeats (many copies) 42 96 IPR002110 GO:0005515
Lsi09g01232 707 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 396 - -
Lsi09g01232 707 MobiDBLite consensus disorder prediction 538 578 - -
Lsi09g01232 707 SMART ANK_2a 75 103 IPR002110 GO:0005515
Lsi09g01232 707 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lsi09g01232 707 SUPERFAMILY Ankyrin repeat 12 142 IPR036770 -
Lsi09g01232 707 SMART ring_2 656 694 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01232 - - - cmo:103499423 360.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01735 Lsi09g01232 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01232 Lsi-Chr9:19773050 Lsi01g00007 Lsi-Chr1:119370 4.91E-06 dispersed
Lsi03g02030 Lsi-Chr3:31684303 Lsi09g01232 Lsi-Chr9:19773050 5.11E-06 transposed
Lsi04g00116 Lsi-Chr4:1266757 Lsi09g01232 Lsi-Chr9:19773050 1.07E-06 transposed
Lsi05g01456 Lsi-Chr5:22427884 Lsi09g01232 Lsi-Chr9:19773050 5.58E-08 transposed
Lsi05g01735 Lsi-Chr5:24782512 Lsi09g01232 Lsi-Chr9:19773050 2.21E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01232 Lsi_Chr09 FPKM 0.547619 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0