Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01236 ATGAGCCAACAAGTGGGAGTGCTAAACGCACTCGATGTTGCAAAAACCCAATGGTACCATTTCACTGCAATTATCATCGCCGGAATGGGTTTCTTCACCGACGCCTACGATCTCTTCTGCATCTCTATTGTCACTAAACTCCTCGGCCGTATCTATTACCATATTCCAAATTCCTCCAGACCCGGCTCCCTCCCCCCCAACATCGCCGCTGCCGTCAACGGCGTCGCCTTCTGCGGTACCCTCACCGGCCAACTCTTCTTCGGCTGGCTCGGCGACAAGCTCGGCCGCAAGAAAGTATACGGCATTACCCTCATTCTGATGGTCGTCTGCTCCATCGCCTCCGGCCTCTCCTTCAGCAACTCCCCAAAAGCCGTCATCGCCACGCTCTGTTTCTTCCGATTCTGGCTCGGCTTTGGAATCGGTGGCGACTACCCTCTCTCCGCCACCATCATGTCCGAATACGCCAACAAAAAAACCCGCGGCGCCTTCATCGCCGCCGTCTTCGCAATGCAAGGCTTTGGAATTTTAGGCGGAGGAATCGTCGCTTTAATCGTCTCTTCCGCCTTCAATAACCGCTTCCCAGCACCACCGTACATGGACAATCCCAGCCGCCCCACTATACCGGAGGCCGATTACGTGTGGCGAATTGTCTTAATGTTCGGCGCAATTCCAGCCGCATTAACATATTACTGGCGGATGAAAATGCCGGAGACGGCGAGATACACCGCCTTGGTCGCTCAAAACGCAAAACAAGCCGCGGCCGACATGTCGAAAGTGCTGCAAGTCCAACTCGAATTAAACGAACGCGAGAAAAATATCATGACCGAATCAAATGAAAATCAAAACCGTTTCGGTTTATTCTCTCGCGAATTTGCCAAACGCCATGGGCTCCACTTAGTTGGTACCACCACCACGTGGTTTCTGTTAGACATAGCGTTTTACAGCCAAAATCTCTTCCAGAAAGACATTTTCACCGCCATTGAATGGCTTCCATCGGCGGCGACGATGAGCGAATTAGAAGAATGCTTCAAAATCGCACGTGCTCAGACACTAATTGCTCTCTGTGGAACAGTTCCCGGTTACTGGTTCACGGTGGCGCTCATCGATTACCTGGGGAGATTTTTTATACAATTGATGGGATTCATAATGATGACGATCTTTATGTTTGCTCTGGCATTTCCTTATAATCATTGGAAGGAGAAGCCTCACCGAATCGGGTTCGTGGTGATGTATTCGTTGACGTTTTTCTTTGCGAATTTCGGGCCGAATTCAACGACGTTTATAGTGCCGGCAGAGATATTTCCAGCGAGGCTGAGGTCGACGTGTCATGGGATATCGGCGGCGGCGGGGAAAGCAGGGGCGATAGTGGGAGCGTTTGGGTTTTTGTATGCGGCGCAGAGTAAGGATCCGAAATTGACGGATCCGGGTTACCCGACGGGGATCGGAGTGAAGAATGCTTTGATTGTGTTGGGATGTGTAAATTTCTTAGGGGCATTGTTTACTCTGTTAGTGCCGGAATCGAAAGGGAAGTCATTGGAGGAGCTGACAGGGGAGAATGAAGGGGAGGACAAGAATGGGAATACAAATATACCTACGGATGTAAATGTCTAA 1611 50.65 MSQQVGVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHIPNSSRPGSLPPNIAAAVNGVAFCGTLTGQLFFGWLGDKLGRKKVYGITLILMVVCSIASGLSFSNSPKAVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIVALIVSSAFNNRFPAPPYMDNPSRPTIPEADYVWRIVLMFGAIPAALTYYWRMKMPETARYTALVAQNAKQAAADMSKVLQVQLELNEREKNIMTESNENQNRFGLFSREFAKRHGLHLVGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPSAATMSELEECFKIARAQTLIALCGTVPGYWFTVALIDYLGRFFIQLMGFIMMTIFMFALAFPYNHWKEKPHRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPKLTDPGYPTGIGVKNALIVLGCVNFLGALFTLLVPESKGKSLEELTGENEGEDKNGNTNIPTDVNV 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19877147 19878757 - Lsi09G012360.1 Lsi09g01236 670849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01236 536 Pfam Sugar (and other) transporter 25 515 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi09g01236 536 Gene3D MFS general substrate transporter like domains 273 532 IPR036259 -
Lsi09g01236 536 Gene3D MFS general substrate transporter like domains 19 265 IPR036259 -
Lsi09g01236 536 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 529 - -
Lsi09g01236 536 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 1 529 - -
Lsi09g01236 536 TIGRFAM 2A0109: phosphate:H+ symporter 10 518 IPR004738 GO:0005315|GO:0006817|GO:0016021
Lsi09g01236 536 SUPERFAMILY MFS general substrate transporter 11 515 IPR036259 -
Lsi09g01236 536 MobiDBLite consensus disorder prediction 513 536 - -
Lsi09g01236 536 MobiDBLite consensus disorder prediction 522 536 - -
Lsi09g01236 536 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 509 IPR020846 GO:0022857
Lsi09g01236 536 CDD MFS_PhT 24 508 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01727 Lsi09g01236 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01728 Lsi-Chr5:24728682 Lsi09g01236 Lsi-Chr9:19877147 0 dispersed
Lsi05g00071 Lsi-Chr5:1448558 Lsi09g01236 Lsi-Chr9:19877147 0 transposed
Lsi08g00415 Lsi-Chr8:11593853 Lsi09g01236 Lsi-Chr9:19877147 0 transposed
Lsi05g01727 Lsi-Chr5:24715306 Lsi09g01236 Lsi-Chr9:19877147 0 wgd
Lsi05g01012 Lsi-Chr5:17605290 Lsi09g01236 Lsi-Chr9:19877147 8.30E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01236 K08176 - csv:101212412 1007.28