Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01239 | ATGAATTCTTCATTATTTCACTCCCAAAACTCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGACAACTGTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTCTACCCGCCGGAGAATTCCCCCCGGCAGGCTCCGATCAAAGACGAGGAGGCCGATTCGCTCGGAGAAGAAGACCCCCACAAGAGAAAGTCCTACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCAGCGGAGATACGAGACTCAACCCGGCATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCAGCCGCTTTGGCCTACGATCAAGCCGCTTTTTCAATGAGGGGTCCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTAAAGGAGATGGAAATGATCAACTCCGCCACACAGGGCGGCGAAGGCGACGGAGACGGCGGATCTCCGGTAGTGGCTCTAAAGAGAAAGCACTCAATGAGGAAGAAATTCACGAGAAGGAAAAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTTGTTTTGGAAGATCTTGGCTCTGATTGTTTAGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCATGGTGA | 699 | 52.22 | MNSSLFHSQNSDLSPESSFGSFESLRWEGFQINDNCLPFNENDSGEMLLHSLISEAAVYPPENSPRQAPIKDEEADSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSATQGGEGDGDGGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDCLEELLKSSENLRPW | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 20024331 | 20025029 | - | Lsi09G012390.1 | Lsi09g01239 | 670852 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01239 | 232 | MobiDBLite | consensus disorder prediction | 163 | 198 | - | - | |
Lsi09g01239 | 232 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01239 | 232 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi09g01239 | 232 | MobiDBLite | consensus disorder prediction | 67 | 87 | - | - | |
Lsi09g01239 | 232 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677 | |
Lsi09g01239 | 232 | PANTHER | DNA-BINDING DOMAIN | 31 | 225 | IPR044808 | GO:0003700|GO:0009873 | |
Lsi09g01239 | 232 | Pfam | AP2 domain | 88 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01239 | 232 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01239 | 232 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01239 | 232 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01239 | 232 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01239 | 232 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 31 | 225 | - | - | |
Lsi09g01239 | 232 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi09g01239 | 232 | MobiDBLite | consensus disorder prediction | 60 | 90 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01239 | Lsi-Chr9:20024331 | Lsi01g00271 | Lsi-Chr1:2414741 | 2.29E-28 | dispersed | |
Lsi05g01725 | Lsi-Chr5:24698937 | Lsi09g01239 | Lsi-Chr9:20024331 | 1.89E-79 | wgd | |
Lsi05g01011 | Lsi-Chr5:17588315 | Lsi09g01239 | Lsi-Chr9:20024331 | 4.73E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25933 | PF00847 | AP2 | 6.00E-15 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01239 | K14516 | - | csv:101206564 | 393.66 |