Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01239 ATGAATTCTTCATTATTTCACTCCCAAAACTCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGACAACTGTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTCTACCCGCCGGAGAATTCCCCCCGGCAGGCTCCGATCAAAGACGAGGAGGCCGATTCGCTCGGAGAAGAAGACCCCCACAAGAGAAAGTCCTACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCAGCGGAGATACGAGACTCAACCCGGCATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCAGCCGCTTTGGCCTACGATCAAGCCGCTTTTTCAATGAGGGGTCCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTAAAGGAGATGGAAATGATCAACTCCGCCACACAGGGCGGCGAAGGCGACGGAGACGGCGGATCTCCGGTAGTGGCTCTAAAGAGAAAGCACTCAATGAGGAAGAAATTCACGAGAAGGAAAAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTTGTTTTGGAAGATCTTGGCTCTGATTGTTTAGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCATGGTGA 699 52.22 MNSSLFHSQNSDLSPESSFGSFESLRWEGFQINDNCLPFNENDSGEMLLHSLISEAAVYPPENSPRQAPIKDEEADSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSATQGGEGDGDGGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDCLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20024331 20025029 - Lsi09G012390.1 Lsi09g01239 670852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01239 232 MobiDBLite consensus disorder prediction 163 198 - -
Lsi09g01239 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Lsi09g01239 232 MobiDBLite consensus disorder prediction 1 20 - -
Lsi09g01239 232 MobiDBLite consensus disorder prediction 67 87 - -
Lsi09g01239 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Lsi09g01239 232 PANTHER DNA-BINDING DOMAIN 31 225 IPR044808 GO:0003700|GO:0009873
Lsi09g01239 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Lsi09g01239 232 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Lsi09g01239 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Lsi09g01239 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Lsi09g01239 232 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Lsi09g01239 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 31 225 - -
Lsi09g01239 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Lsi09g01239 232 MobiDBLite consensus disorder prediction 60 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01239 Lsi-Chr9:20024331 Lsi01g00271 Lsi-Chr1:2414741 2.29E-28 dispersed
Lsi05g01725 Lsi-Chr5:24698937 Lsi09g01239 Lsi-Chr9:20024331 1.89E-79 wgd
Lsi05g01011 Lsi-Chr5:17588315 Lsi09g01239 Lsi-Chr9:20024331 4.73E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25933 PF00847 AP2 6.00E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01239 K14516 - csv:101206564 393.66