Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01250 ATGGTTGCAGAGCCTTGGATTGTGAAAATGGGGAACCAGGTTAGTGCTAATCTCAAACACGCCCTCCTCGAACCTTCGAAGAACAAGAACTCTAAAAAACCAGAAATCGGTGGCAATACTAAGCAAAGAATCGGTATTCTCTCTTTTGAAGTTGCTAATGTAATGTCCAAAACGATTTACCTTCATAAATCCCTGTCTCATTCTGCCATTTCGAAGCTCAAGAACGAGATCTTGAGCTCTTATGGAGTTAAAAACCTTGTTTCCTCGGATGAGGTTCATCTTCTCGAGCTTGTGGTTGCTGAGAAGCTTGAGGATTTAAACCGAGTGGCTAATGTGGTTTCTAGGCTTGGGAAGAAGTGTTCTCAACCTGCGTTACAGGGGTTTCAACATGTGTACTTGGATATCATTAATGGAGTTATAAATGTGAAGGAATTGGGGTTTTTAGTGAAGGATATGGAGGGGATGATGAGAAAAATGGAGAGGTATGTGAATGCTACGGCAAATTTGTACACTGAAATGGAGGTTTTGAATGAATTGGAACAGGCTGCAAAGAAGTTTCAGAACAATCAGCATGAAGAGAGCAGAAAGGCGTATGAACAGAAACTTATATGGCAGAAACAAGACGTGGGGCATCTCAAGGATATTTCTCTTTGGAACCAAACGTATGATAAGGTTGTTGAATTGCTGGCGAGAACTGTTTGTACAGTTTATGCGAGGATTCATTTAGTATTTGGGGACCCTTTCCTGAAGAAGGATGTGAATGAGAATGGCTCAAGTAATGATGTGAATCATCATGTTCAGATTGGTGCAGAGTCTATGGAATCGAAACGTGCGTCTGTCGAGAGAGGCTCTGGAGCAAGATGGGGGTCGGGTTTTATGTCTCAAATTAGCTCAAGAAGAGGCGAGGTTCCATTGTTTACACCTGATGACTTCAATTTCCCTTGTGGAACAAATCCCGGGAGGCTTCTCATGGATTGCCTTAGTTTAAGTAGTTCAGTTTCCAAGTTGGATGATGAGGATGAGGATAGTTATGTTGACCGTGACGATCGAAGCTGCCAAACCTCCGGTCGTAGCATTAGGAACAGTGGCTCCAGCCAATTCAGTTCTTTCAGTCAGGTGCAATTCTCTGTTCCATTTGGGGTGGATCAAAGACAAGCAAAAAGTGTGATGTCTAACAGTGGAGGAAACTTCGGCCTCAAAAGTAGGTTATCTGTCTATGCACCGGTTTCAACCATTGGAGGCTCTGCGCTTGCTTTGCATTATGCTAATATCATCATTGTCATAGAAAAGTTACTTCGTTATCCTCATTTAGTTGGCGACGAAGCTCGAGACGATTTATATCAAATGCTACCAACAAGTTTAAGATCATCCCTGAAAACACATTTGAAGTCTTATGTCAAGAACCTGGCTATATATGATGCTCCTCTTGCCCATGATTGGAAGGAGACTGTCGATGGGATCTTGAGCTGGCTCGCTCCGTTGGCACACAACATGATTCGATGGCAAAGCGAGCGCAATTTCGAACAACATCAGATTGTGACTCGGACAAATGTATTGCTGATCCAAACATTGTATTTTGCTGATCGCAAGAAGACTGAGGAAGCCATATGTGAGCTTCTTGTTGGATTGAATTACATTTGCCGCTACGAGCATCAGCAAAATGCATTGCTGGATTGCGCAAGTAGTTTCGACTTTGAAGATTGTATGGAGTGGCAGTTGCAATGTAAAGCTTCGTTTCTTACTTGA 1746 42.73 MVAEPWIVKMGNQVSANLKHALLEPSKNKNSKKPEIGGNTKQRIGILSFEVANVMSKTIYLHKSLSHSAISKLKNEILSSYGVKNLVSSDEVHLLELVVAEKLEDLNRVANVVSRLGKKCSQPALQGFQHVYLDIINGVINVKELGFLVKDMEGMMRKMERYVNATANLYTEMEVLNELEQAAKKFQNNQHEESRKAYEQKLIWQKQDVGHLKDISLWNQTYDKVVELLARTVCTVYARIHLVFGDPFLKKDVNENGSSNDVNHHVQIGAESMESKRASVERGSGARWGSGFMSQISSRRGEVPLFTPDDFNFPCGTNPGRLLMDCLSLSSSVSKLDDEDEDSYVDRDDRSCQTSGRSIRNSGSSQFSSFSQVQFSVPFGVDQRQAKSVMSNSGGNFGLKSRLSVYAPVSTIGGSALALHYANIIIVIEKLLRYPHLVGDEARDDLYQMLPTSLRSSLKTHLKSYVKNLAIYDAPLAHDWKETVDGILSWLAPLAHNMIRWQSERNFEQHQIVTRTNVLLIQTLYFADRKKTEEAICELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQLQCKASFLT 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20178244 20179989 + Lsi09G012500.1 Lsi09g01250 670863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01250 581 PANTHER PLANT/PROTEIN (DUF668) 1 575 - -
Lsi09g01250 581 Coils Coil 176 196 - -
Lsi09g01250 581 PANTHER BNAC09G50660D PROTEIN 1 575 - -
Lsi09g01250 581 MobiDBLite consensus disorder prediction 338 365 - -
Lsi09g01250 581 MobiDBLite consensus disorder prediction 338 354 - -
Lsi09g01250 581 Pfam Domain of unknown function (DUF3475) 46 102 IPR021864 GO:0045927
Lsi09g01250 581 Pfam Protein of unknown function (DUF668) 411 500 IPR007700 GO:0045927
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01250 - - - csv:101220789 1055.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01947 Lsi-Chr3:30868610 Lsi09g01250 Lsi-Chr9:20178244 6.26E-72 dispersed
Lsi05g01303 Lsi-Chr5:20789086 Lsi09g01250 Lsi-Chr9:20178244 6.18E-42 dispersed
Lsi08g01313 Lsi-Chr8:21494700 Lsi09g01250 Lsi-Chr9:20178244 4.00E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g645 . . . . . Bpe14g01239 . . Cmo08g01071 Cmo17g00172 . . . . . . . . . . . . . . Cla06g00647 Cam06g0691 Cec06g0694 Cco06g0700 Clacu06g0678 Cmu06g0669 Cre06g1438 . Cone15ag0149 Cone7ag0308 Cone4ag0309 . Csa02g01080 Chy05g00340 . Blo02g00625 Blo07g00251 Bda11g00620 Bda13g00078 . Bpe13g00567 Bma02g00798 Bma06g01591 Sed04g1971 . . Cma08g01095 Cma17g00175 Car08g00970 Car17g00155 Cpe12g00150 Cpe17g00184 Bhi12g01642 Tan06g2433 Cmetu05g0804 Lac12g2197 Hepe03g0264 . Lcy13g0353 . . . . . . . Lsi09g01250 . . Cme05g00544
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003694 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01250 Lsi_Chr09 FPKM 3.094918 3.775655 44.133583 40.700264 86.765633 80.483978 86.503288 17.126383 16.658718 15.480131