Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01252 ATGATTCTCCCAATTTTTATAAATTTATCCTACTTGCAAAATTTCCGTCGGGTGGGCTTTCCGGCTACCGACCCAATTTCAACCACCGTCGACGGCAGTGGAAGAGATCATGACGACGACGAAGACGAGCCAAACGCAAGCGGCGTGGTGGTCGGAAACCGCCGATCCAGAGGACGGCCACCGGGATCAAAAAACAAACCAAAATCTCCAATCATCGTCACGCGCGACAGCCCTCACGCGCTCCGCACGCACGTGATCGAGATCGCCGGAGGAGCCGACGTCGCCGACAGCATAAACCAATTCTCCTGCCGCCGACAACGTGGGGTTTGTGTTCTCAGTGGCAGTGGTACGGTTGTGGACGTAACTCTCCGGCAATCCGCCGGTTCCGCCGCCGTGATCCAACTTCACGGCCGGTTCGAGATTCTATCTGTGAGTGGGTCTTTTCTTCCCGGTCGAGCCCCTCCCGGTTCGACCGGGCTGACCGTGTACCTGTCTGGCGGTCAGGGGCAGGTGATTGGAGGGACGGTGGTGGGCCCACTGTTGGCGGCTGGGCCAATAATTTTGATAGCTGCTACTTTTGCTAATGCAACTTATGAGAGATTGCCTTTACAAGACGACCATAATTATCAAGAAAGAGAGGTTTCTCCGGCCACCACTAGCGGCGGAGAAGTGGAGGAGCCGCCGCCGTATCCTGGGATGGCAACTTCAATTTACGACTTGATGGCACCAAATAATCATGATGGAATTGATGGGTATGCTTGGACTCATGGGAGACCATCTCTTGTTTAA 789 54.5 MILPIFINLSYLQNFRRVGFPATDPISTTVDGSGRDHDDDEDEPNASGVVVGNRRSRGRPPGSKNKPKSPIIVTRDSPHALRTHVIEIAGGADVADSINQFSCRRQRGVCVLSGSGTVVDVTLRQSAGSAAVIQLHGRFEILSVSGSFLPGRAPPGSTGLTVYLSGGQGQVIGGTVVGPLLAAGPIILIAATFANATYERLPLQDDHNYQEREVSPATTSGGEVEEPPPYPGMATSIYDLMAPNNHDGIDGYAWTHGRPSLV 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20189174 20190892 + Lsi09G012520.1 Lsi09g01252 670865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01252 262 CDD DUF296 82 193 IPR005175 -
Lsi09g01252 262 Gene3D - 81 216 - -
Lsi09g01252 262 PANTHER DNA-BINDING PROTEIN-LIKE 27 256 - -
Lsi09g01252 262 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Lsi09g01252 262 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 256 IPR014476 GO:0003680
Lsi09g01252 262 ProSiteProfiles PPC domain profile profile. 78 215 IPR005175 -
Lsi09g01252 262 MobiDBLite consensus disorder prediction 205 229 - -
Lsi09g01252 262 MobiDBLite consensus disorder prediction 23 76 - -
Lsi09g01252 262 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00361 Lsi-Chr3:4260949 Lsi09g01252 Lsi-Chr9:20189174 1.46E-62 dispersed
Lsi04g02277 Lsi-Chr4:29799053 Lsi09g01252 Lsi-Chr9:20189174 2.77E-42 dispersed
Lsi05g01920 Lsi-Chr5:26394918 Lsi09g01252 Lsi-Chr9:20189174 6.64E-70 dispersed
Lsi05g01968 Lsi-Chr5:26816488 Lsi09g01252 Lsi-Chr9:20189174 1.23E-64 dispersed
Lsi06g01296 Lsi-Chr6:23506130 Lsi09g01252 Lsi-Chr9:20189174 2.22E-20 dispersed
Lsi09g01252 Lsi-Chr9:20189174 Lsi09g01903 Lsi-Chr9:27888660 2.41E-61 dispersed
Lsi11g01313 Lsi-Chr11:21770634 Lsi09g01252 Lsi-Chr9:20189174 4.31E-64 dispersed
Lsi01g01258 Lsi-Chr1:10798017 Lsi09g01252 Lsi-Chr9:20189174 1.58E-11 transposed
Lsi11g00415 Lsi-Chr11:4359591 Lsi09g01252 Lsi-Chr9:20189174 3.12E-71 wgd
Lsi05g01697 Lsi-Chr5:24537270 Lsi09g01252 Lsi-Chr9:20189174 6.48E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01252 - - csv:101221494 375.941