Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01255 ATGAAGCACCATCAAGTTCAAGAAACCACCGCCACCTCCGCCGCTAGTACACTGAATTTCAACTTTCCGACGACCTCCGATGGCTACACAATCATTACTCAGATCGGTGCCAGCCCCCACAGCATTGTGTACATGGCCCATTGCAAGTCGGAAGACTCGACGACGATCACCGTCGCCGTAAAGATTATGGATATCAATATCAATCTCGACCTCAATTCCCTAAACGCTTCACTATCACTGATCAACCACCCCAATATTCTCCGGCCACATTGTTGTTTCGTCGGCGACGACGGCCGCATTTGGATCGTAATGCCCTTCATTCCAACCGGCCCTTTACAATCCGTTATTTCTCACAGTTTCCCAAGAGGTATGCCAGATCAATTCACCTCCATTCTTTTAAACCAACTCCTTCGTGCTTTGGTTTATCTTCACGAAATGGGGTTTGTTCATAAAGCCATTAAAACAAGTAATATCTTCGTTGATTCAAAAGGCTGTGCTAAGCTCTCTGTTTTTGACATCATGCTCTCCAAGAACAATACTAATGAAATTGATCATGATTCTTCAATTCCTTATTGGGTTCCACCGGATGAAGAATATAGTTTCAAATCAGATATTTGGGGAATTGGGGTTTTAGCTATGGAAATTACTTGGGGGGGTCCTCCAATTATAGACCCAAGAATTCTTGAATCACAATTGTTTAATATCTCAAGAAGGTTTCCTTATGAATCGAAAACAGAGAAGATTGGTGACAGAAGATTCTTTGGAGACTCTGTTAAGGAATTTGTGAAATCTTGCCTTGTCAAAGATCGATTTCGAAGGCCTACGGCTTCGAGTTTGTTGACACATCCGTTTGTCAAGAAAGGGGAAAAACCGAATTTTTTGTTCAGGAGTATTCCTAAAGGAATGATTAACATTGATAAAAAATTTGAACAAGAAAAAGAAAGAATCATTGGGTTTATGAAAAATGACGAGAAATTGAAGAGTGAAAGTGACAAGACTATGAAGATTAGTGGATGGGATTATAATTTTTTTTTGTTTGAACTTGAACCTGATGGGAAATCAGTAGGGAAAAGAGTTCGATTTGGTGGGGAAGTCATAACGCTAGTTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAAAAGAAGAGAGCAAGAAAGTTGATGATATGTCATCTTTACTGCAAAAAATACAGAGTAATTTGAGTGATGCTGGTGAACCAAGCAAGGCTGGTGAGAAGAAGAAGAAGAAGAGCAAGAAGAATTTTGATGAAGAAAGTTTCGTGAAAATGTTGTCTTCATTCTTAGGTAATATTGATCAACAAAGGAAGATCTCTTTGATTTTGATAAATCATCTTGATCATTTGACTGAAAAACAGTTGAAAATAAGTAATGAAATCAATGAGTTACAGGCAGATTTGGCTTATGAGAAAGAAAGATACTTTCAATTAGAGTTGGAATGTGAATTTCTAAAGCTCAAAATTCCTGATTCTGAAGATGAAGATGAATATTATGATGAAGAACAGCAAGATTCTCAAGAGTGA 1557 38.09 MKHHQVQETTATSAASTLNFNFPTTSDGYTIITQIGASPHSIVYMAHCKSEDSTTITVAVKIMDININLDLNSLNASLSLINHPNILRPHCCFVGDDGRIWIVMPFIPTGPLQSVISHSFPRGMPDQFTSILLNQLLRALVYLHEMGFVHKAIKTSNIFVDSKGCAKLSVFDIMLSKNNTNEIDHDSSIPYWVPPDEEYSFKSDIWGIGVLAMEITWGGPPIIDPRILESQLFNISRRFPYESKTEKIGDRRFFGDSVKEFVKSCLVKDRFRRPTASSLLTHPFVKKGEKPNFLFRSIPKGMINIDKKFEQEKERIIGFMKNDEKLKSESDKTMKISGWDYNFFLFELEPDGKSVGKRVRFGGEVITLVKEEEEEEEEEEEDEEEKEESKKVDDMSSLLQKIQSNLSDAGEPSKAGEKKKKKSKKNFDEESFVKMLSSFLGNIDQQRKISLILINHLDHLTEKQLKISNEINELQADLAYEKERYFQLELECEFLKLKIPDSEDEDEYYDEEQQDSQE 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20212599 20214155 - Lsi09G012550.1 Lsi09g01255 670868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01255 518 MobiDBLite consensus disorder prediction 370 423 - -
Lsi09g01255 518 Coils Coil 457 491 - -
Lsi09g01255 518 Coils Coil 365 392 - -
Lsi09g01255 518 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 16 505 - -
Lsi09g01255 518 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 16 505 - -
Lsi09g01255 518 SUPERFAMILY Protein kinase-like (PK-like) 24 296 IPR011009 -
Lsi09g01255 518 ProSiteProfiles Protein kinase domain profile. 29 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01255 518 Gene3D Transferase(Phosphotransferase) domain 1 25 324 - -
Lsi09g01255 518 Pfam Protein kinase domain 29 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01255 518 MobiDBLite consensus disorder prediction 370 388 - -
Lsi09g01255 518 MobiDBLite consensus disorder prediction 396 410 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01693 Lsi09g01255 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00901 Lsi-Chr6:18615542 Lsi09g01255 Lsi-Chr9:20212599 0 dispersed
Lsi06g00903 Lsi-Chr6:18636092 Lsi09g01255 Lsi-Chr9:20212599 0 dispersed
Lsi09g01255 Lsi-Chr9:20212599 Lsi03g01252 Lsi-Chr3:23117627 1.45E-39 dispersed
Lsi05g01693 Lsi-Chr5:24479118 Lsi09g01255 Lsi-Chr9:20212599 2.36E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83909 PF00069 Pkinase 1.50E-28 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01255 K08835 - cpep:111806976 451.44