Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01258 ATGGCAAGAAAGTTACCTTTTCAAATTGGGCAACTGGTTGAATCACGTTGCTTTCTCATTGGTTATCGTGGTGCTTGGTTCCGATGTAAGATAAAGGACATTGGCTGGAGAATGGGTAGTCTATCTTATGAATTGGAATTTATTGACTTTCCAGATGAAGTACTTGGTAGTCGAAGACTTGTGGAATATTTACCAGCAGTAGAAGTAAAATGGACAAAGCCATTTCAAAAACCACCTGCAGCCTTTGGTATCCCATCAACTGGGCCAAAAGGGCAGTTGATGGTGCGTCCTCAGTTTCCACAAGTTTGTCGTGAAAAACAATTATCTGATCTTAGTACGAATTCTCAGCTAGAGGTGACTGTTGTTGTGAATGATGTCTGGAAGGTTGGGGATTTAGTTGATTGGTGGAAGGATAACTGTTATTGGTCTGGCAAAATAATTGCCATATTGGGGGATGAGGAGGTCAAGGTTGAGCTGCTCCCCCCACCATTAGGTGAAGGATTGGCTTACCATGCCTCCTCCAAGGATCTGCGGCCATCCTTAGACTGGTCTCCCGAATCTGGTTGGACGGTCCCTAATATGAAGGTGCCATTCTTTCAACTGTTCTCAATATTGGTCCTGTTGGTGAATGGAAGTACTCAATGTGCTCGGGTGCTTAACAATGGAAGTGTAGATTTGAGAACCCAGAACGGGAGTGCAGGAAATGGAAGTGAACCCCCAGCTGGAAAATCAAATGCATCATTAGCTTTACAGACTAGTTCAATGCAGCGTACTCATGAGCCAGCAAGAAAGTTGAAGCGACTGCTTCGCGACACAGCATCGATGGAGAAACACAAACACACACCAGAAATAAATTCCGATTCAAACCATGTAAATAATATAGCCAAGAAAACTAATACGTTGGAGGATGACTCAAGTTCACCTGCTGAAAAACTAGATGCATCAACTGAAGTTCAAGGTACAAGAACTGATGCAGATGGGTGTAATGACGGTCAATCTGTAAAGACGACCGTGCCCGATATCAGTTTGAATTCCACACACCATGGTTCTTTAGAAGATGCTATTTCGGACTTGGAAGAGATGATAAACCGGATTAAATGGATTAAACAAATTTTGGATGGTGGAATAGCTTTGCCAAATGCTTCAAGATCTTCATGGAAATTTCTGGAACACCGACCCTCCTTTACACCAAAATGA 1197 42.86 MARKLPFQIGQLVESRCFLIGYRGAWFRCKIKDIGWRMGSLSYELEFIDFPDEVLGSRRLVEYLPAVEVKWTKPFQKPPAAFGIPSTGPKGQLMVRPQFPQVCREKQLSDLSTNSQLEVTVVVNDVWKVGDLVDWWKDNCYWSGKIIAILGDEEVKVELLPPPLGEGLAYHASSKDLRPSLDWSPESGWTVPNMKVPFFQLFSILVLLVNGSTQCARVLNNGSVDLRTQNGSAGNGSEPPAGKSNASLALQTSSMQRTHEPARKLKRLLRDTASMEKHKHTPEINSDSNHVNNIAKKTNTLEDDSSSPAEKLDASTEVQGTRTDADGCNDGQSVKTTVPDISLNSTHHGSLEDAISDLEEMINRIKWIKQILDGGIALPNASRSSWKFLEHRPSFTPK 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20231651 20244438 - Lsi09G012580.1 Lsi09g01258 670871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01258 398 SMART agenet_At_2 125 185 IPR014002 -
Lsi09g01258 398 Pfam Agenet domain 10 100 IPR008395 -
Lsi09g01258 398 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 3 394 - -
Lsi09g01258 398 MobiDBLite consensus disorder prediction 298 332 - -
Lsi09g01258 398 MobiDBLite consensus disorder prediction 311 332 - -
Lsi09g01258 398 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 3 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01258 - - - bhj:120068068 655.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g629 . Blo12g00362 Bda03g00847 . Bpe04g00801 . Bma04g00747 . Cmo08g01075 . . . . . . . . . . . . . . . Cla06g00641 Cam06g0686 Cec06g0688 Cco06g0695 Clacu06g0672 . Cre06g1431 . . . . . . Chy05g00346 . . . . . . . . . . . . Cma08g01102 . Car08g00976 . . Cpe17g00180 Bhi12g01653 . . Lac12g2204 Hepe03g0259 . Lcy13g0345 . . . . . . . Lsi09g01258 . . Cme05g00537
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010419 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 0 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01258 Lsi_Chr09 FPKM 0.356108 0.0 0.188664 0.711985 1.122826 0.680863 0.764645 0.0 0.375879 0.132006