Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01259 ATGGAGATGGAAGGTACAGATGTTTGCATGGACAAAGAGCCAGATCGTGTTATAACATATTCCACTGGAGGAGTTTCTCATGTTTCATCTTGTGAAGATAGCCTCAGTCATCAAGATGTCATGGAGTCTTTTGGCGAAATAAATGGGGATCATGATATCAACAATTCAGAAGAGGGAAGCGAAGCAAAGGAATATGAAGTGAAGGAATGCACAAATGAAAAATCAATCAAGATTCCTGAACTGCACCTCTCAGAGAAACCTGAAGAACAGCAAAATGTGATCAGCTTGAATAAGGAGAAAGAGAGACTGGAGGAGAAGGTGCTACAAGAAGGAAAGAATGATGACAAATCTCTTTTAACAGTGAAGTCTTCAAAATCTTCTGCTGGAAATGCTCGCACAAGACACACTGTTCCACAGCCGTTTGCCTTAGCAACAGAAAAGCGTGCTTCATGTGGTACTCGACCTCCCAATGCTATCACCACTGAAAAATCTACCAAAAACAATATTCGGCCTGCAAAGGCCAAATCAAATCAGCCTGCATCACCTAGGGGGCTGAGGAAGCCACTGCAACCTACTAACAAGAAGCATGCTGATGAGGAAGATTCCTGCTCGGTAGTTTCCATTGCAGCTTCATCTCGGGCTATTAAGACCAGAATTACTGTTGCATCAGCTCCTGCATTTAGATGCACAGAGCGTGCAGAGAAAAGAAAGGAGTTTAATTCGAAGTTGGAGGAAAAACTCCAGGCTCTGGTGGCTGAGAAGACTGAGTGTGAGACGAGGTCCAAGGAAGAGACTGAGGCCGCTATCAAACAATTAAGAAAGAGTTTATTATTCAAAGCAAATCCAATGCCAAGCTTCTACCATGATGGGCCTCCGCCCAAGGCTGAGCTGAAAAAGCTCCCACCAACTCGTGCGAAGTCACCTAAACTTGGCCGACGTAAAAGTTGCAATGATGCTGTTCATTCATCATATGGAGACAAGATAAAAGTCAGTTGTGGCAAGGGAAATGGCCGTCGTACAGACAGTTACAACAGAGATATCATTGCATTGGATGTTATTCGGGATCAGAGGGATGTTTTTCGCTTTGTAGAAAATGAGCTGAAGCAAGGAGGAGCTTTTCACGAGGTGATTCCTACTGATGTAAATGGTCCAAAGAATATGAATATTTCTGTCCACTCTTGA 1182 43.49 MEMEGTDVCMDKEPDRVITYSTGGVSHVSSCEDSLSHQDVMESFGEINGDHDINNSEEGSEAKEYEVKECTNEKSIKIPELHLSEKPEEQQNVISLNKEKERLEEKVLQEGKNDDKSLLTVKSSKSSAGNARTRHTVPQPFALATEKRASCGTRPPNAITTEKSTKNNIRPAKAKSNQPASPRGLRKPLQPTNKKHADEEDSCSVVSIAASSRAIKTRITVASAPAFRCTERAEKRKEFNSKLEEKLQALVAEKTECETRSKEETEAAIKQLRKSLLFKANPMPSFYHDGPPPKAELKKLPPTRAKSPKLGRRKSCNDAVHSSYGDKIKVSCGKGNGRRTDSYNRDIIALDVIRDQRDVFRFVENELKQGGAFHEVIPTDVNGPKNMNISVHS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20253282 20256181 + Lsi09G012590.1 Lsi09g01259 670872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01259 393 Coils Coil 240 260 - -
Lsi09g01259 393 Coils Coil 86 113 - -
Lsi09g01259 393 MobiDBLite consensus disorder prediction 154 175 - -
Lsi09g01259 393 MobiDBLite consensus disorder prediction 78 202 - -
Lsi09g01259 393 Pfam Targeting protein for Xklp2 (TPX2) domain 226 295 IPR027329 -
Lsi09g01259 393 MobiDBLite consensus disorder prediction 120 134 - -
Lsi09g01259 393 MobiDBLite consensus disorder prediction 290 318 - -
Lsi09g01259 393 PANTHER PROTEIN WVD2-LIKE 3 1 344 - -
Lsi09g01259 393 MobiDBLite consensus disorder prediction 78 119 - -
Lsi09g01259 393 PANTHER PROTEIN WVD2-LIKE 3 1 344 IPR044806 GO:0000226|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01259 - - - csv:101216353 706.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01621 Lsi-Chr2:22063923 Lsi09g01259 Lsi-Chr9:20253282 2.28E-08 transposed
Lsi03g01794 Lsi-Chr3:29368411 Lsi09g01259 Lsi-Chr9:20253282 6.94E-21 transposed
Lsi04g02130 Lsi-Chr4:28429360 Lsi09g01259 Lsi-Chr9:20253282 1.97E-23 transposed
Lsi06g00788 Lsi-Chr6:16327382 Lsi09g01259 Lsi-Chr9:20253282 9.96E-65 transposed
Lsi11g00427 Lsi-Chr11:4528210 Lsi09g01259 Lsi-Chr9:20253282 8.20E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g620 . . . . . Bpe14g01230 . . Cmo08g01076 Cmo17g00174 . . . . . . . . . . . . . . Cla06g00640 Cam06g0684 Cec06g0687 Cco06g0693 Clacu06g0670 Cmu06g0662 Cre06g1430 . . Cone7ag0300 Cone4ag0301 . Csa02g01086 Chy05g00348 . Blo02g00609 . . . . . . . Sed09g0705 . . Cma08g01104 Cma17g00176 Car08g00977 Car17g00158 Cpe12g00152 Cpe17g00179 Bhi12g01656 Tan06g2442 Cmetu05g0483 Lac12g2205 Hepe03g0258 . Lcy13g0344 . . . . . . . Lsi09g01259 . . Cme05g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008644 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01259 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.185803 0.098877 0.074987