Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01263 ATGGATGATAATTTTCCTGTCGAATTCTGGCATAACGATTTCTTTTGGCTCGACGCTCCCATTTCCGTCCCTGTACCCGCCCCCGCCTCTACCTCCACTCCCACGAGACAGATAAGTGCTTTCGTACCATATCTGTCTCAACCGTCTACCGAATTGGAACAAGAAAACAATCAGACAACTACTACTACTACCACTATCATCACCACCACCAGCACCAGCTATAATTCTAGGAATGTCAACAAGAGGATGGTTGAGTATTGGAGGAGGCATTGGGAGGAAAAGAAAGAACCAACTGCCTTAGTAGATTTAGAAAGAGAAAAATGTCACAGGCACATGTTGAATGAGAGGACGAGGAGAGAGAAACAGAAACAGAGTTATTTGGCACTCCACTCCATTCTCCCAAAAAACACTAAGAACGATAAGAACTCAATCGTTCAAAGCGCAGCAAGAACGATACAAGAAATGAAAGCCTTAGAGAAGATTTTAAAGAGGAGAAACTTAGAGTTGGAGATGGCAATAGCAATGAAGAAGAAAGAAAAAGAAAAAGGGACAACACCAATAATAAGTGTAGCAATGCCCAACCCTTCTTGTGGGATCAACTCAATGTTGACTGTTCTCAATGTTCTCAAAAGTGTAGGAGCAAATTCCAAAGCCATTCGTGCTACTTTCTTCAAGTCTCAGTTTTCAGCCCAATTAGCCATTGATACCCATATGGGAGCTGCCGAAGTAGAAAGAGCATTGCAGGTGACGCTAAACGAAGCAGAGAGGAAATTTCAAAGGCAATGCAAGGAAGGATCCAAAGAAATAAAAAAGAGCCATTTTAATTTTAATAATAATAATGGGGCCCACGAGGTGGGTCCAGAATTTGAAATCTAG 876 41.89 MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTTTTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRREKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTHMGAAEVERALQVTLNEAERKFQRQCKEGSKEIKKSHFNFNNNNGAHEVGPEFEI 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20303550 20304929 - Lsi09G012630.1 Lsi09g01263 670876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01263 291 SMART finulus 112 161 IPR011598 GO:0046983
Lsi09g01263 291 PANTHER TRANSCRIPTION FACTOR BHLH92 1 263 - -
Lsi09g01263 291 CDD bHLH_AtbHLH_like 111 162 IPR045239 -
Lsi09g01263 291 Gene3D - 106 184 IPR036638 GO:0046983
Lsi09g01263 291 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 263 IPR044658 -
Lsi09g01263 291 Pfam Helix-loop-helix DNA-binding domain 107 155 IPR011598 GO:0046983
Lsi09g01263 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
Lsi09g01263 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 173 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01263 - - - bhj:120068148 464.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01263 Lsi-Chr9:20303550 Lsi07g01198 Lsi-Chr7:17487021 4.07E-06 dispersed
Lsi09g01263 Lsi-Chr9:20303550 Lsi11g00185 Lsi-Chr11:1912716 8.79E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g612 . . . . . . . . Cmo08g01078 Cmo17g00176 . . . . . . . . . . . . . . Cla06g00637 Cam06g0681 Cec06g0684 Cco06g0690 Clacu06g0667 Cmu06g0659 Cre06g1427 . . . Cone4ag0295 . Csa02g01090 Chy05g00351 . . . . . . . . Bma06g01583 . . . Cma08g01106 Cma17g00179 Car08g00979 Car17g00161 Cpe12g00155 . . . . . . . . . . . . . . . Lsi09g01263 . . Cme05g00532
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008643 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25936 PF00010 HLH 1.60E-06 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01263 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.211362 0.0