Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01276 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGGCGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCTTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGATTTTAAAAATGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGTGGCCAACATGATGGTGAAGCTGAAGAAGATGGTAAGCATTTTTCTTCTGCCACCCACAATTCTTTCTTAATACAAGTAACTAAAGCAATCAAATTTGTTCTTGTGATTTGCTTTTACTTCATCAATATATTAATGATCTTGAGAGAGTGCATTCCAGATTCGCCATTTGAATTTCGTGCCCTTGAAGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGGTGAGAGATAATATTGTTAAGTTATGGCTCCATCTTGTGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCAACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTTGAAATGTTACTGGAGCTGCGAGAATATATTGATGACACAGAAGATTATATCAATATCCAGCTAGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGCCGATCATGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGCGCGGTGTTGTTCGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1314 43.15 MARDGHVVPVDPQTALTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEDFKNVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGGQHDGEAEEDGKHFSSATHNSFLIQVTKAIKFVLVICFYFINILMILRECIPDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKVRDNIVKLWLHLVISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNADHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20562789 20567791 - Lsi09G012760.1 Lsi09g01276 670889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01276 437 CDD Mrs2_Mfm1p-like 28 434 IPR039204 -
Lsi09g01276 437 Gene3D Magnesium transport protein CorA, transmembrane region 178 367 - -
Lsi09g01276 437 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 149 - -
Lsi09g01276 437 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 191 437 IPR039204 -
Lsi09g01276 437 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 149 IPR039204 -
Lsi09g01276 437 Coils Coil 253 280 - -
Lsi09g01276 437 Gene3D - 14 102 - -
Lsi09g01276 437 PANTHER MAGNESIUM TRANSPORTER MRS2-I 191 437 - -
Lsi09g01276 437 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 373 425 IPR045863 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01276 K16075 MRS2, MFM1; magnesium transporter - csv:101203841 622.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00899 Lsi-Chr8:17351890 Lsi09g01276 Lsi-Chr9:20562789 2.98E-19 dispersed
Lsi03g00598 Lsi-Chr3:7436108 Lsi09g01276 Lsi-Chr9:20562789 5.36E-46 transposed
Lsi03g01255 Lsi-Chr3:23169213 Lsi09g01276 Lsi-Chr9:20562789 6.29E-59 transposed
Lsi05g00158 Lsi-Chr5:2309975 Lsi09g01276 Lsi-Chr9:20562789 3.89E-20 transposed
Lsi05g00972 Lsi-Chr5:16940257 Lsi09g01276 Lsi-Chr9:20562789 4.86E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01255 . 1 447 MRS2 Gene Family AT1G16010 85.0 6.6e-207 716.8
Lsi08g00899 . 6 380 MRS2 Gene Family AT1G16010 52.6 4.1e-108 388.7
Lsi09g01276 . 1 410 MRS2 Gene Family AT5G64560 63.1 4.0e-128 454.9
Lsi05g00972 . 662 969 MRS2 Gene Family AT5G64560 59.5 1.8e-91 333.2
Lsi03g00598 . 244 730 MRS2 Gene Family AT3G19640 62.3 1.7e-147 519.6
Lsi05g00158 . 54 473 MRS2 Gene Family AT3G58970 65.1 1.7e-138 489.6
Lsi08g00899 . 6 380 MRS2 Gene Family AT2G03620 68.6 2.0e-136 482.6
Lsi03g01255 . 13 447 MRS2 Gene Family AT2G03620 52.8 3.4e-112 402.1
Lsi09g01276 . 1 372 MRS2 Gene Family AT5G09690 56.7 5.3e-97 351.3
Lsi05g00972 . 662 957 MRS2 Gene Family AT5G09690 57.8 3.2e-86 315.5
Lsi03g01255 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.5e-78 288.1
Lsi09g01276 . 23 321 MRS2 Gene Family AT5G09720 55.5 1.9e-72 269.6
Lsi05g00972 . 696 945 MRS2 Gene Family AT5G09720 57.7 3.6e-68 255.4
Lsi03g01255 . 1 447 MRS2 Gene Family AT1G80900 83.2 1.2e-200 696.0
Lsi08g00899 . 6 380 MRS2 Gene Family AT1G80900 54.2 1.3e-106 383.6
Lsi03g00069 . 116 255 MRS2 Gene Family AT5G22830 68.6 6.1e-46 182.2
Lsi03g00068 . 1 139 MRS2 Gene Family AT5G22830 61.4 4.4e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01276 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0