Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01276 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGGCGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCTTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGATTTTAAAAATGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGTGGCCAACATGATGGTGAAGCTGAAGAAGATGGTAAGCATTTTTCTTCTGCCACCCACAATTCTTTCTTAATACAAGTAACTAAAGCAATCAAATTTGTTCTTGTGATTTGCTTTTACTTCATCAATATATTAATGATCTTGAGAGAGTGCATTCCAGATTCGCCATTTGAATTTCGTGCCCTTGAAGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGGTGAGAGATAATATTGTTAAGTTATGGCTCCATCTTGTGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCAACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTTGAAATGTTACTGGAGCTGCGAGAATATATTGATGACACAGAAGATTATATCAATATCCAGCTAGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGCCGATCATGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGCGCGGTGTTGTTCGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1314 43.15 MARDGHVVPVDPQTALTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEDFKNVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGGQHDGEAEEDGKHFSSATHNSFLIQVTKAIKFVLVICFYFINILMILRECIPDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKVRDNIVKLWLHLVISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNADHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20562789 20567791 - Lsi09G012760.1 Lsi09g01276 670889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01276 437 CDD Mrs2_Mfm1p-like 28 434 IPR039204 -
Lsi09g01276 437 Gene3D Magnesium transport protein CorA, transmembrane region 178 367 - -
Lsi09g01276 437 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 149 - -
Lsi09g01276 437 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 191 437 IPR039204 -
Lsi09g01276 437 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 149 IPR039204 -
Lsi09g01276 437 Coils Coil 253 280 - -
Lsi09g01276 437 Gene3D - 14 102 - -
Lsi09g01276 437 PANTHER MAGNESIUM TRANSPORTER MRS2-I 191 437 - -
Lsi09g01276 437 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 373 425 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00899 Lsi-Chr8:17351890 Lsi09g01276 Lsi-Chr9:20562789 2.98E-19 dispersed
Lsi03g00598 Lsi-Chr3:7436108 Lsi09g01276 Lsi-Chr9:20562789 5.36E-46 transposed
Lsi03g01255 Lsi-Chr3:23169213 Lsi09g01276 Lsi-Chr9:20562789 6.29E-59 transposed
Lsi05g00158 Lsi-Chr5:2309975 Lsi09g01276 Lsi-Chr9:20562789 3.89E-20 transposed
Lsi05g00972 Lsi-Chr5:16940257 Lsi09g01276 Lsi-Chr9:20562789 4.86E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01276 K16075 - csv:101203841 622.468