Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01280 ATGGCTTTTGCTGGCATCAATTCCATTGGTCGCATCAACTTCCTTCGTCTTCCACTCTCCGCCGCTACTACTACTACTGCTGCTCCTCTTTCTCGGAGCTTTCAATTTCTCAGAGCCACCCGCCTCTTCTCGTTCGATAAGGAGGAGGTTCGCATGGTTTTCTTTTGTAGAAAACTGTCAACTGCCTTGGCCATGGATGTTTCAAAGATTAGTAACGTCGTTGACGAGTTTCCATCTGGGATTGATCCAACAACTGAGGAAGAATATGCTGAACAGTCCAAATTACTTCAAGAATTCACGAAAATTCCTAACATTGATAAGGCATGGACGTTTAAATCTGATAGCGGTATGATTGCTGTTGTTTATGCTAGTGCATTTTCCACTCTGGGAGACCCCGTGGCAACATTTTCAATTAGCCAAGCGAGTCTTCTAGCAAATAAGAAGAGAAAATATACTCTGTCAGCTCACATTTCCAAGGGAAACGACAGCACCTCAGTGAACTTTATATGGACGCCATTTCCTGTTGAAATGATTGGAGTCTCTACAATAGTGCCATCACCATCAGGCTCAAAATTTCTTGCAGTTCGTAATCCTGAAAATGATTCTCCAGTTCAGTTGGAAATTTGGAGTGCAGGTCAAATCGAAAAGGAGTTTCACATCCCCCAATCTATCCATGGATCAATATATACTGATGGATGGTTTGAGGGAATCTCTTGGCACTCAAATGAAACTTACATTGCTTATGTTGCGGAGGAACCTTCTCCCTCCAAGCCAACGTTTACTGTTTCTGGATATCAAAAAGGTTGCTCAACAAATAAGGATTCTACGAACTGGAAAGGTCAAGGGGATTTTAAAGAAGACTGGGGGGAAGCTTATGCAGGTAAAAGGCAGCCTGCTCTCTTTGTCATCAATATTGACAGCGGAGAGGTAAGGCATGTGAAAATAATCGAGCATTCTTTGAGTGTGGGTCAAGTTGTATGGGCTCCATCTATTGGCGAGGATCAATATTTGGTTTTTGTTGGGTGGTCATCAGAGCCTAGAAAACTTGGTATGATCTACTGCTATAATCGGCCTTGTGCATTATATGCAGTTAAGGCTCCAGATTATGGATCTGAAGTTAATGAACATAAACTCAAAGATGAATCAAAGAAGGATTTTCCCCTCTATAATCTAACTCAGAACATAAGTAGTGCCTTCTTTCCTCGGTTCAGCCCAGATGGGAAGTTCCTTGTATTTTTATCTGCACACACGTCTGTGAACTCTGGCGCCCATTCTGCAACAAATTCTCTTCACAGAATCAACTGGCCTAGAGATGGAAAACTTAGTTTTGGTGAAAATATTGTTGATGTGGTTCCTGTGGTCCACTGGGCTGAGAACGACCTCTTTCCTGGCCTCTATTCACATGGTTTCCTGGCTAATCCTTGGCTTTCCGATGGACACACTGTTATTACAACTGGTGAAGTTTCATGCATCAGTCCTGCCAACTCAAACTTTTCTTGGAAAGTTCTTGCTATAGATGGAGACAACGTGGTTGCTGTTTCTAGCAGCCCAGTGGATATTCCTCAACTCAAGTATGGTTGTCTTATTGAGAAAGAAACTAAGAATGCTGCATGGAGTTGGTTGGATGTATCAAGTCCTGTTTTTAAATGCTCCGAGAAGGTTAAAACTCTACTCTCATCCCTCCAGTTCAGCATAATGAAGATTCCAGTCAAGGACGTTTCCAACAGCCTGACAAAAGGTGCCAGTGAACCTTTTGAAGCTATCTTTGTATCTCCGAAGTCCGTCAAAGGTAATGAATTGAATCCAGTTATTGTTAACCTTCATGGGGGTCCCCATTCTACGTCAATATCAAGCTTCTCGAAGTCCTTGGCATTTCTCTCTTCAATAGGATTCAACCTTTTGGTTGTGAACTATAGAGGTTCATTGGGGTTCGGTGAGGAAGCATTGCAATCTCTTCCTGGAAAAATTGGGTCCCAGGATGTCAATGATGTACTTACCGCATTAGATCACATTATCGACAAGGGACTTGCAAGTTCATCTAAAGTTGCAGTTCTTGGTGGTTCCCATGGGGGGTTTTTGACAACTCATTTGATTGGCCAGGCACCAGATAGATTTGTGGCAGCTGCCGCAAGAAATCCTGTGTGTAACCTTGCTTTAATGGTTGGCACATCAGATATTCCTGATTGGTGTTATGTGGAATGTTATGGAAGGGAGGGCAAGAAGTACTTCACGGAAGCACCATCTGCTGAGCACCTAATCCACTTGTACAACAAATCTCCCATTCTACATGTCTCAAAAGTTAAAGCACCTACCATTTTTCTTTTAGGTGCTAAAGATCTTCGTGTTCCATTTTCGAATGGGTTGCAATTTGCCCGAGCATTGAAGGAGAAAGGAGTTGAGGTCAAAGTTGTCATGTTTCCAGACGATATTCATCCAATTGACAGGCCACAATCGGATTTCGAAAGCTTCCTCAACATTGGTGTGTGGTTGAAGAAATACTGCAAGTGA 2508 42.66 MAFAGINSIGRINFLRLPLSAATTTTAAPLSRSFQFLRATRLFSFDKEEVRMVFFCRKLSTALAMDVSKISNVVDEFPSGIDPTTEEEYAEQSKLLQEFTKIPNIDKAWTFKSDSGMIAVVYASAFSTLGDPVATFSISQASLLANKKRKYTLSAHISKGNDSTSVNFIWTPFPVEMIGVSTIVPSPSGSKFLAVRNPENDSPVQLEIWSAGQIEKEFHIPQSIHGSIYTDGWFEGISWHSNETYIAYVAEEPSPSKPTFTVSGYQKGCSTNKDSTNWKGQGDFKEDWGEAYAGKRQPALFVINIDSGEVRHVKIIEHSLSVGQVVWAPSIGEDQYLVFVGWSSEPRKLGMIYCYNRPCALYAVKAPDYGSEVNEHKLKDESKKDFPLYNLTQNISSAFFPRFSPDGKFLVFLSAHTSVNSGAHSATNSLHRINWPRDGKLSFGENIVDVVPVVHWAENDLFPGLYSHGFLANPWLSDGHTVITTGEVSCISPANSNFSWKVLAIDGDNVVAVSSSPVDIPQLKYGCLIEKETKNAAWSWLDVSSPVFKCSEKVKTLLSSLQFSIMKIPVKDVSNSLTKGASEPFEAIFVSPKSVKGNELNPVIVNLHGGPHSTSISSFSKSLAFLSSIGFNLLVVNYRGSLGFGEEALQSLPGKIGSQDVNDVLTALDHIIDKGLASSSKVAVLGGSHGGFLTTHLIGQAPDRFVAAAARNPVCNLALMVGTSDIPDWCYVECYGREGKKYFTEAPSAEHLIHLYNKSPILHVSKVKAPTIFLLGAKDLRVPFSNGLQFARALKEKGVEVKVVMFPDDIHPIDRPQSDFESFLNIGVWLKKYCK 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20635402 20646765 + Lsi09G012800.1 Lsi09g01280 670893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01280 835 Pfam Prolyl oligopeptidase family 618 834 IPR001375 GO:0006508|GO:0008236
Lsi09g01280 835 SUPERFAMILY alpha/beta-Hydrolases 585 834 IPR029058 -
Lsi09g01280 835 SUPERFAMILY DPP6 N-terminal domain-like 174 507 - -
Lsi09g01280 835 PANTHER ACYLAMINO-ACID-RELEASING ENZYME-LIKE 64 835 - -
Lsi09g01280 835 Pfam WD40-like Beta Propeller Repeat 398 414 IPR011659 -
Lsi09g01280 835 Gene3D alpha/beta hydrolase 577 833 IPR029058 -
Lsi09g01280 835 ProSitePatterns Prolyl endopeptidase family serine active site. 663 693 IPR002471 GO:0004252|GO:0006508
Lsi09g01280 835 PANTHER SERINE PEPTIDASE S9 FAMILY MEMBER 64 835 - -
Lsi09g01280 835 Pfam Acylamino-acid-releasing enzyme, N-terminal domain 85 369 IPR045550 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01280 K01303 APEH; acylaminoacyl-peptidase [EC:3.4.19.1] - csv:101207866 1476.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00022 Lsi-Chr9:188335 Lsi09g01280 Lsi-Chr9:20635402 8.41E-10 dispersed
Lsi09g01280 Lsi-Chr9:20635402 Lsi04g01788 Lsi-Chr4:25099882 4.20E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g595 . Blo12g00352 Bda03g00853 . Bpe04g00806 . Bma04g00754 . . Cmo17g00189 . . . . . . . . . . . . . . Cla06g00623 Cam06g0662 Cec06g0665 Cco06g0672 Clacu06g0649 Cmu06g0642 Cre06g1410 Cone14ag0894 . . . . Csa02g01108 Chy05g00368 . . . . . . . . . Sed04g1948 . . . Cma17g00192 . Car17g00170 Cpe12g00164 . Bhi12g02257 Tan06g2468 Cmetu05g0174 . . . Lcy13g0325 . . . . . . . Lsi09g01280 . . Cme05g00514
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009067 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01280 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0