Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01281 ATGGAGCCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCTCCGCCACCTACTGGCGCTACTCTCCTAGGCAAGTACCAATTTGGCCGTTTCCTCGGCCGTGGAAGCTTCGCCAAGGTGTACCAGGCCCGTTCTCTCGCCGATAACTCCATTGTCGCCGTTAAAATCATCGACAAGAACAAAACCATCGGCGCCGCCATGGAGCCCTGCATTGTGCGTGAGATCTCCGTGATGCGACGCCTTCAGCATCATCCGAACATCCTCAAAATCCATGAAGTTATGGCGACGAAAACGAAGATCTACCTCGTTGTCGATTACGCCTCCGGAGGTGAACTATTCGCGAAACTCCTCCGCCGTGGTCGGCTGACGGAATCCACCGCCCGCCGCTACTTTCAACAGTTAGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCGTCGCTCATCGGGACATTAAACCCCAAAATCTCCTCCTCGATGAAGACGGTAACCTAAAGGTCTCCGACTTCGGTCTCTCCGCCTTACCAGAACAAATCAAAGACGGAATGCTTCATACCGCCTGTGGAACTCCGGCGTACACCGCGCCAGAGGTTGTTTCCCGGCGAGGCTACGACGGCGCAAAAGCCGATGCGTGGTCCTGTGGCGTCATCCTCTTCGTCTTACTCTCCGGCCATCTTCCATTCAGCGATAACAACCTCGTCGCTATGTACAAGAAGGTTTATCGCCGGGAATATCAATTTCCCGATTCAATTTCAAAGCCAGCGAGACATTTGATCTTCCAATTACTCGATCCAAATCCAAACACAAGGATGAGCATCGAGGCGTTGATGCAACATTCATGGTACAAGAAATCACTGCGATCGAAACCCCAAATTAGCAACAGGAGCTTATTTGAATCATTAGGTAATTACAAATCTGATTTGGGTGTTTCTGGACTAAATGCATTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCTGGATTGTTTGAGACTACTGATTGTAATAAGAAGAGATTCACAACAGGAGTTAGTATGGAGAAAGTGAAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTACAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTAGGGAAAGGGAGAATGATTTTGGTGGTGGAAGCTTTGGAAATAACTTCAAATCTGTTAATGGTGGAAGTGAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGGGATTTGAAAGCAAAATTGCAAGACATTGTTGATTCTTGGCATACAAATGAAGCAATGTGA 1293 48.57 MEPGGPPTPPPLPPPPTGATLLGKYQFGRFLGRGSFAKVYQARSLADNSIVAVKIIDKNKTIGAAMEPCIVREISVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSDLGVSGLNAFDIISMSSGLDLSGLFETTDCNKKRFTTGVSMEKVKERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVDSWHTNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20651591 20652883 - Lsi09G012810.1 Lsi09g01281 670894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01281 430 CDD CIPK_C 312 414 - -
Lsi09g01281 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01281 430 SUPERFAMILY Protein kinase-like (PK-like) 22 289 IPR011009 -
Lsi09g01281 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 427 - -
Lsi09g01281 430 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01281 430 Gene3D Kinase associated domain 1, KA1 308 422 - -
Lsi09g01281 430 PANTHER SERINE/THREONINE KINASE 16 427 - -
Lsi09g01281 430 Gene3D Transferase(Phosphotransferase) domain 1 17 307 - -
Lsi09g01281 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Lsi09g01281 430 Pfam NAF domain 311 365 IPR004041 GO:0007165
Lsi09g01281 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Lsi09g01281 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01281 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01655 Lsi09g01281 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01281 Lsi-Chr9:20651591 Lsi01g01604 Lsi-Chr1:14328759 5.87E-133 dispersed
Lsi03g02143 Lsi-Chr3:32588195 Lsi09g01281 Lsi-Chr9:20651591 7.37E-48 transposed
Lsi10g01273 Lsi-Chr10:17000650 Lsi09g01281 Lsi-Chr9:20651591 4.16E-33 transposed
Lsi05g01655 Lsi-Chr5:24219412 Lsi09g01281 Lsi-Chr9:20651591 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83910 PF00069 Pkinase 5.20E-73 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01281 K12761 - csv:101215156 813.142