Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01284 ATGGAAATTCGGGGAAAGATGAAGATTCAACCTATTGATATCGATCCTCCAACTGGAAGGGTAGCCATTCGTACTGATCCTGGCAAACCAGTACTGAAATCGCGTCTAAGAAAGCTATTTGATCGGCCGTTTCCGAATGTTCTAAAGAATTCTGCTTCGGAAAAGCCAATCGCGGCTGGGGAAGCTGTACAGTTCATCATCAACAAAGATGGAGTCTCTGAGTTCGAGCCGAGCTCCATTTGTTTGGCTAAAATGGTGCAGAGTTTTATAGAGGAGAGTAACGAGAAACAGTTGTCGGTGGCCACTGCTGTGAAGAATGGTCGCAACCGCTGCAATTGCTTCAACGGGAATAATAATGACAGTTCTGATGATGAGTCCGATGACTTCGGCGGTGGTTTTGGTGAATCTGTAACAATCGGATCATCTGGTGCCGATGTTTCTGACTTACTCAAGAGTCTGATACTTTGCGCCAGCGTAGCCGAGAGAAACCTCTTAGCCGACACCGCAAAGATTGTTGAGAAGAACAACAAAATTCACAAAAGGAAAGATGATTTGAGAAAAGTTGTCACAGATGGCCTTTCATCTCTCGGTTACGATTCTTCAATCTGTAAATCAAAATGGGACAAATCCCCGTCGCATCCTGCAGGGGAATATGAATACATTGATGTGATGGTGGCGGGCGAGAGATTGGTGATAGACATAGATTTCAGATCGGAGTTTGAGATCGCTCGTTCGACCGGAATGTACAAGGCGATTCTCCAATTACTCCCGAATATCTTCGTCGGAAAAACAGATCGTCTAGGTCAAATCGTATCGATCGTATCAGAGGCTGCGAGACAGAGCTTGAAGAAGAAGGGGATGCACTTTCCGCCATGGAGGAAAGCTGAATACATGAGAGCTAAATGGCTTTCCCCTCACTACAGGTCCAAACCTCCAAATCCATCGGTAAAGGAGATCGAAATCTCGGACATGAATCAAAACGAGAACAATGAGCAATCGCCGACAGAGACGGACTGCGGAGAATTTGAATTGATATTCGGCGACGAAACGACGACGACGACATCACCTGAGAGTAATTCAATCGCTTCATCGCCTCCTCCGCAGAAAGGTTTGTATGGCGGCGAGAAGGCGGCGGTGGCAGTGACGGTCTGGCAACCTCCGGCGATCAAACCGAAGAGTCTCGATAGAGGAGCTAAGATCGTTACGGGATTGGCATCAATCCTGAAAGAGAATCCGTAA 1239 46.89 MEIRGKMKIQPIDIDPPTGRVAIRTDPGKPVLKSRLRKLFDRPFPNVLKNSASEKPIAAGEAVQFIINKDGVSEFEPSSICLAKMVQSFIEESNEKQLSVATAVKNGRNRCNCFNGNNNDSSDDESDDFGGGFGESVTIGSSGADVSDLLKSLILCASVAERNLLADTAKIVEKNNKIHKRKDDLRKVVTDGLSSLGYDSSICKSKWDKSPSHPAGEYEYIDVMVAGERLVIDIDFRSEFEIARSTGMYKAILQLLPNIFVGKTDRLGQIVSIVSEAARQSLKKKGMHFPPWRKAEYMRAKWLSPHYRSKPPNPSVKEIEISDMNQNENNEQSPTETDCGEFELIFGDETTTTTSPESNSIASSPPPQKGLYGGEKAAVAVTVWQPPAIKPKSLDRGAKIVTGLASILKENP 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20689457 20691659 - Lsi09G012840.1 Lsi09g01284 670897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01284 412 PANTHER OS03G0796600 PROTEIN 28 412 IPR006502 -
Lsi09g01284 412 PANTHER - 28 412 - -
Lsi09g01284 412 Pfam PDDEXK-like family of unknown function 84 308 IPR006502 -
Lsi09g01284 412 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 186 309 IPR006502 -
Lsi09g01284 412 MobiDBLite consensus disorder prediction 350 374 - -
Lsi09g01284 412 MobiDBLite consensus disorder prediction 350 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01284 - - - csv:101219203 699.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01652 Lsi09g01284 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01630 Lsi-Chr2:22197396 Lsi09g01284 Lsi-Chr9:20689457 9.91E-31 dispersed
Lsi09g01284 Lsi-Chr9:20689457 Lsi10g00901 Lsi-Chr10:13357694 1.23E-31 dispersed
Lsi11g01565 Lsi-Chr11:23935319 Lsi09g01284 Lsi-Chr9:20689457 1.82E-28 dispersed
Lsi10g00715 Lsi-Chr10:10008638 Lsi09g01284 Lsi-Chr9:20689457 1.99E-30 transposed
Lsi05g01652 Lsi-Chr5:24169313 Lsi09g01284 Lsi-Chr9:20689457 4.86E-177 wgd
Lsi05g00970 Lsi-Chr5:16917592 Lsi09g01284 Lsi-Chr9:20689457 2.19E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g585 Blo01g00105 Blo12g00349 Bda03g00856 Bda08g00262 . Bpe14g01218 Bma04g00756 Bma05g01084 Cmo08g01092 Cmo17g00192 Cma06g01353 Cma14g01763 . Car14g01589 Sed02g1359 Cpe08g00298 Cpe03g01479 Bhi01g00743 Tan10g0768 Cmetu06g2260 Lac12g2236 Hepe05g1600 . Lcy11g1597 Cla06g00620 Cam06g0659 Cec06g0663 Cco06g0669 Clacu06g0646 Cmu06g0640 Cre06g1407 . . Cone7ag0287 Cone4ag0281 Lsi05g01652 Csa02g01111 . Cme06g00558 Blo02g00595 Blo07g00238 Bda11g00605 . Bpe05g00874 Bpe13g00581 . Bma06g01578 Sed04g1945 Cmo06g01366 Cmo14g01803 Cma08g01116 Cma17g00197 Car08g00999 Car17g00174 Cpe12g00168 Cpe17g00169 Bhi12g02250 Tan06g2473 Cmetu05g0608 . Hepe03g0238 . Lcy13g0320 Cla05g00497 Cam05g0545 Cec05g0558 Cco05g0556 Clacu05g0542 Cmu05g0514 Cre05g0582 Lsi09g01284 Csa03g01276 Chy06g00528 Cme05g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001669 2 2 3 3 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01284 Lsi_Chr09 FPKM 145.676727 161.514374 111.490631 105.284882 187.222534 182.512451 176.936646 121.557579 119.930054 118.393745