Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01285 ATGACACAGTCTCTGCAAATTTTCACCTCCTCCGCCCGCTCTCCCGGCATTTCTCTACCCAAACACTCCCTTTCTAAACCCTCTCCTTCCTCCGCCGCTCTCCGCTTTCCCTTCTCCTTTTCCAAATCCTCAATTCGAGCCTGTTCTTCTCCGGATCTCAATCCTCTCTCATCTTCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGCTCCAGTGGTGGAGGTGGGGTTGTGTCCTCTTATGCTACTAGGGAGTTTGTGCCTCTTGCTTCTGACTCCACCTCGATTGAGGTCGATGCTGTCACGGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGTACCAGGAGGACCAAGCTCGTGTGCACTATTGGCCCTGCTAGTTGTGGATTCGACCAGCTCGAGGCGCTCGCTGTTGGCGGTATGAATGTCGCTAGGATCAATATGTGCCATGGGACTCGAGACTGGCATCGAACGGTCATTGAACGCGTGCGGAGGCTCAATGACGAGAAGGGCTATGCTGTTGCTATCATGATGGATACTGAAGGGAGTGAAATTCACATGGGTGATCTTGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACCATTAATGTGAACTATGAAGGGTTTGCAGAAGATGTGAGAGTGGGTGATGACCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAACTTGGTCCTGATGTTAAGTGTCGGTGTACTGACCCGGGATTGTTGTTGCCACGGGCTAATTTGACTTTTTGGAGGGATGGACATCTAGTACGAGAACGTAATGCCATGCTCCCTACAATTTCCTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTCTTGCCATATCATTTGTCAAGTCTGCTGAAGTAATTAAACATCTTAAAAGCTATATTGCTGCACGTTCTCGTGGCAGTGACATTTCCATCATTGCGAAAATAGAAAGTCTGGACTCGTTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTGTGCAGGCAATTAAATAAACCAGTTATTGTTGCTTCTCAGTTGCTTGAGTCAATGATCGAATACCCTACACCCACCAGAGCTGAAGTGGCTGATGTTTCCGAGGCGGTTAGGCAGCGATCAGATGCTCTAATGCTCTCTGGTGAGTCCGCCATGGGCCAGTACCCCGACAAGGCATTGGCTGTTTTGAGAAGTGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGCCATGAACCTATGGAACTCCCAGAAATTGGATCTTCATTCTCAGATAGTATCCTAGAAGAGATCTGCAATTCGGCTGCCAAGATGGCCAATAATTTGGAGGTGGATGCAATTTTCGTCTACACAACATCAGGCCACATGGCATCTCTCCTGTCCCGTTGCCGACCCGATTGCCCAATCTTTGCTTTTACTTCCACGACATCTGTGAGGAGACGTCTTAACTTGCAATGGGGATTGATACCCTTCCGGCTGAGCTTCTCTGAAGACATGGAAAACAACCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTAATTGCTGTCTCAGACATGTTGCAGTCTATTCAAGTTATGAATGTTCCATAA 1785 47.06 MTQSLQIFTSSARSPGISLPKHSLSKPSPSSAALRFPFSFSKSSIRACSSPDLNPLSSSSTSQVLVSENGSSGGGGVVSSYATREFVPLASDSTSIEVDAVTEAELKENGFRSTRRTKLVCTIGPASCGFDQLEALAVGGMNVARINMCHGTRDWHRTVIERVRRLNDEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDDLLVDGGMVRFEVIEKLGPDVKCRCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRSDALMLSGESAMGQYPDKALAVLRSVSLRIEKWWRDEKRHEPMELPEIGSSFSDSILEEICNSAAKMANNLEVDAIFVYTTSGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSEDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20707624 20712483 - Lsi09G012850.1 Lsi09g01285 670898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01285 594 ProSitePatterns Pyruvate kinase active site signature. 337 349 IPR018209 GO:0004743|GO:0006096
Lsi09g01285 594 MobiDBLite consensus disorder prediction 1 30 - -
Lsi09g01285 594 MobiDBLite consensus disorder prediction 51 74 - -
Lsi09g01285 594 Gene3D - 458 584 IPR036918 -
Lsi09g01285 594 Gene3D - 115 457 IPR040442 -
Lsi09g01285 594 SUPERFAMILY PK C-terminal domain-like 446 592 IPR036918 -
Lsi09g01285 594 PANTHER PYRUVATE KINASE 83 594 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 Pfam Pyruvate kinase, alpha/beta domain 485 584 IPR015795 -
Lsi09g01285 594 SUPERFAMILY PK beta-barrel domain-like 184 275 IPR011037 -
Lsi09g01285 594 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 83 594 - -
Lsi09g01285 594 PRINTS Pyruvate kinase family signature 307 321 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 PRINTS Pyruvate kinase family signature 366 390 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 PRINTS Pyruvate kinase family signature 391 415 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 PRINTS Pyruvate kinase family signature 339 365 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 PRINTS Pyruvate kinase family signature 416 434 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 PRINTS Pyruvate kinase family signature 435 451 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 PRINTS Pyruvate kinase family signature 172 188 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 100 461 IPR015813 GO:0003824
Lsi09g01285 594 Pfam Pyruvate kinase, barrel domain 115 460 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 TIGRFAM pyruv_kin: pyruvate kinase 115 583 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi09g01285 594 Gene3D - 183 289 IPR015806 GO:0004743|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01285 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101218017 1054.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01004 Lsi-Chr3:19328922 Lsi09g01285 Lsi-Chr9:20707624 7.70E-67 dispersed
Lsi05g01173 Lsi-Chr5:19656033 Lsi09g01285 Lsi-Chr9:20707624 8.27E-113 dispersed
Lsi09g01285 Lsi-Chr9:20707624 Lsi10g00912 Lsi-Chr10:13581683 3.83E-74 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01285 Lsi_Chr09 FPKM 58.151566 56.137878 55.460983 53.856525 63.185898 75.502525 62.439373 50.841866 51.444019 50.440041