Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01289 ATGGAGATGGGGGAAGGTCTGACTAATGAACAAATGGATCAACTTATGGAAGCTTTTCTTTTATTTGACAAAAACAGAGATGGTGGGTCACTTTCTTGTTGCATCACTCTTGATGAACTGAGAGCAGAGATCAGAAATTTGGGTCAAAATCCAACAGAGGAAGAACTCAAGGAAATGATTAAAGAAGTTGATGCTGATGGAAATGGAACTATTGAGTTTTGGGAATTCCACAAATTAATGTCCAAAATCATGAAGGAAGAAACAGAGGAGAAGCTCAAAGAAGCCTTCAAAGTGTTTGATAAAAACCAAGATGGATATATATCAGCAAATGAGTTGAGCCATGTCTATTTGATGCTTAATTTGGGGGAGAAGTTAACAGATGAGGAAGTTCTGCAGTTGATCAGAGAGGCTGATTTGAATGGGGATGGCCAAGTTGACTATAATGAGTTTGTGAAGATGATGACTCAGGATGTGTCACAAATCCTACCAAAAAGAGGCTTTTTTTAA 507 37.87 MEMGEGLTNEQMDQLMEAFLLFDKNRDGGSLSCCITLDELRAEIRNLGQNPTEEELKEMIKEVDADGNGTIEFWEFHKLMSKIMKEETEEKLKEAFKVFDKNQDGYISANELSHVYLMLNLGEKLTDEEVLQLIREADLNGDGQVDYNEFVKMMTQDVSQILPKRGFF 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20735196 20736414 + Lsi09G012890.1 Lsi09g01289 670902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01289 168 Gene3D - 85 165 - -
Lsi09g01289 168 ProSiteProfiles EF-hand calcium-binding domain profile. 10 50 IPR002048 GO:0005509
Lsi09g01289 168 PANTHER CALCIUM BINDING PROTEIN 4 156 - -
Lsi09g01289 168 Gene3D - 2 84 - -
Lsi09g01289 168 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Lsi09g01289 168 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Lsi09g01289 168 CDD EFh 95 155 IPR002048 GO:0005509
Lsi09g01289 168 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Lsi09g01289 168 SMART efh_1 129 157 IPR002048 GO:0005509
Lsi09g01289 168 SMART efh_1 14 47 IPR002048 GO:0005509
Lsi09g01289 168 SMART efh_1 55 83 IPR002048 GO:0005509
Lsi09g01289 168 SMART efh_1 91 119 IPR002048 GO:0005509
Lsi09g01289 168 CDD EFh 14 81 IPR002048 GO:0005509
Lsi09g01289 168 SUPERFAMILY EF-hand 4 164 IPR011992 -
Lsi09g01289 168 Pfam EF-hand domain pair 13 81 IPR002048 GO:0005509
Lsi09g01289 168 Pfam EF-hand domain pair 89 155 IPR002048 GO:0005509
Lsi09g01289 168 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Lsi09g01289 168 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Lsi09g01289 168 PANTHER CALMODULIN-LIKE PROTEIN 8 4 156 - -
Lsi09g01289 168 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01289 K13448 CML; calcium-binding protein CML - bhj:120092962 288.115
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01649 Lsi09g01289 CCT
Lsi05g01649 Lsi09g01289 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01289 Lsi-Chr9:20735196 Lsi10g00945 Lsi-Chr10:13873535 1.54E-54 dispersed
Lsi05g01649 Lsi-Chr5:24137362 Lsi09g01289 Lsi-Chr9:20735196 9.25E-08 wgd
Lsi05g00964 Lsi-Chr5:16824442 Lsi09g01289 Lsi-Chr9:20735196 2.97E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g579 . Blo12g00346 . . . Bpe14g01216 . . . . Cma06g01355 Cma14g01760 . Car14g01586 Sed02g1356 Cpe08g00295 Cpe03g01476 Bhi01g00746 Tan10g0775 Cmetu05g0607 Lac12g2244 Hepe05g1596 . Lcy11g1593 Cla06g00617 Cam06g0655 Cec06g0659 Cco06g0664 Clacu06g0642 Cmu06g0636 Cre06g1403 . . Cone7ag0286 Cone4ag0279 Lsi05g01649 Csa02g01119 Chy05g00375 Cme06g00564 . Blo07g00237 Bda11g00603 Bda13g00097 . Bpe13g00582 Bma02g00820 Bma06g01576 . Cmo06g01370 Cmo14g01800 . . . Car17g00178 Cpe12g00172 . Bhi12g02245 . . . . . Lcy13g0316 Cla05g00500 Cam05g0549 Cec05g0562 Cco05g0560 Clacu05g0546 Cmu05g0518 Cre05g0586 Lsi09g01289 Csa03g01280 Chy06g00532 Cme05g00495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014362 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01289 Lsi_Chr09 FPKM 28.21137 30.702314 2.090987 2.275301 15.41595 12.892862 14.110593 0.104093 0.029405 0.0299