Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01291 ATGGAAGGAAAGCCCCAAAAACTGATCGAAATCCCCAGAGCCTTGAAACAGCTCCCTCGAGAGAAGATTCAGTTAGCTACAAAGTTTGGGATTGTACCATTAGGAGGATTAGAATTTGCAGTTAATGGGACACCTGAATATGTAAGAAACTGCTGTGAAGCGAGTCTCGAGCGCCTTCAAGTTGATTATATCGACCTCTACTATCAGCATCGTATCGACATATCTGTGCCAATTGAAGAAACTATGGGAGAGCTAAAGAAGCTGGTGGAAGAGGGGAAGATAAAGTACATCGGGTTGTCCGAAGCAAGTGCAAACACGATTAGGAGAGCTCATGCAGTTCATCCAATCACTGTCATTCAAATGGAGTATTCATTGTGGAGTCGTGACATTGAAGATGACATAATTCCACTTTGTAGGGAGCTAGGAATTGGGATAGTGGCTTACAGTCCTCTGGGTCGAGGGTTCTTTGGAGGAAAGGCAATTGCAGAGGGCTCATTGGCTTATCATCCAAGGTTTAGCAAGGAGAGTTTAGAACAGAATGAAGCTATTTACAGAAGGCTTGCTAATCTAGCTGTGAAGCATGGTTATACCACAGTTCAGTTGGCTTTAGCTTGGCTGCTCCATCAGGGCATTGATATTGTTCCCATCCCAGGGACAACCAAACTAGGGAACCTTGACAGCAACATTGAGTCATTGGATGTGAAGCTAACAGAGGAAGATTTCAAAGAAATTGGCGATGCTGTGCCAGTTGATGAAGTTAGAGGCCAACGAGAATATGATGTTCTTACCAAATATATGTGGAAGCAATTGCAACTTCTGCAAACTAAGCTTTTTGATCATAGTGAAATGGAGGAAAAGCCTCAAAATCTGAGCCAAATCCCGAGAGTGAAGCTGGGTAGCCAAGGACTGGAGGTTTCAAGGTTGGGTTTCGGATGTGCAGGACTATCGGGACTTTACAATGCTCCCCTAACTCATGAAGGTGGATGTCGCATGATTAAACAAGTTTTCACTAGAGGCATAACCTTTTTCGATACTTCCGATCTTTATGGAGCCGATCATGACAATGAAATCATGGTCGGAAAGGCTTTAAAACAGCTTCCTCGAGAGAAGATCCAGTTAGCTACAAAATTTGGCATTTTGCCATTAGGAAGCTTTCAATTTGCAGTAAATGGGACACCTGAATATGTAAGGAAGTGCTGTGAAGCAAGTCTCGAGCGGCTTCAAGTTGATCACATTGACCTCTATTATCAGCATCGCATCGACCTATCTGTGCCAATTGAGGAAACTATGGGAGAGTTGAAGAAGCTGGTGGAGGAGGGGAAGATAAAGTACATCGGTCTGTCTGAAGCGAGTGCAGACATGATCCGGAGAGCCCATGCAGTTCATCCAATCACTGCCTTACAGATGGAGTATTCCCTGTGGTGCCGTGAAACTGAAGATGAGATAATCCCACTTTGCAGAGAGCTTGGAATTGGGATAGTGGCTTACAGCCCTTTGGGTCGAGGCTTCTTTGGCGGAAAGGCGGTTATAGAGAGCTTGCCCAGTGAGAGCTTGCTGGTTAAACATCCAAGGTTCAGCAAGGATAGTTTAAAAGTTAATGAAACTATCTATGAACGGCTTGTTGATCTGGCTGCCAAGCATCGCTGCACGACTGCTCAGTTGGCTTTAGCATGGCTGCTTCATCAGGGTATTGATATAGTTCCCGTCCCAGGGACAACCAAAGTTGGAAACCTTGACAGCAACATTGGGTCACTAAGTGTGAAGCTAACAGAGAAGGATTTGAAAGAAATTAGTGATGCTGTGCCAATTGATGAAGTTAGAGGTGAGCGAGAATATGATGCATTCTCCAGCTATATGTGGAACTATGCAGGTTCCTCATCAAAGGGCTGA 1890 44.6 MEGKPQKLIEIPRALKQLPREKIQLATKFGIVPLGGLEFAVNGTPEYVRNCCEASLERLQVDYIDLYYQHRIDISVPIEETMGELKKLVEEGKIKYIGLSEASANTIRRAHAVHPITVIQMEYSLWSRDIEDDIIPLCRELGIGIVAYSPLGRGFFGGKAIAEGSLAYHPRFSKESLEQNEAIYRRLANLAVKHGYTTVQLALAWLLHQGIDIVPIPGTTKLGNLDSNIESLDVKLTEEDFKEIGDAVPVDEVRGQREYDVLTKYMWKQLQLLQTKLFDHSEMEEKPQNLSQIPRVKLGSQGLEVSRLGFGCAGLSGLYNAPLTHEGGCRMIKQVFTRGITFFDTSDLYGADHDNEIMVGKALKQLPREKIQLATKFGILPLGSFQFAVNGTPEYVRKCCEASLERLQVDHIDLYYQHRIDLSVPIEETMGELKKLVEEGKIKYIGLSEASADMIRRAHAVHPITALQMEYSLWCRETEDEIIPLCRELGIGIVAYSPLGRGFFGGKAVIESLPSESLLVKHPRFSKDSLKVNETIYERLVDLAAKHRCTTAQLALAWLLHQGIDIVPVPGTTKVGNLDSNIGSLSVKLTEKDLKEISDAVPIDEVRGEREYDAFSSYMWNYAGSSSKG 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20768964 20774540 + Lsi09G012910.1 Lsi09g01291 670904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01291 629 SUPERFAMILY NAD(P)-linked oxidoreductase 295 600 IPR036812 -
Lsi09g01291 629 CDD AKR_AKR13D1 294 597 - -
Lsi09g01291 629 PRINTS Aldo-keto reductase signature 85 102 IPR020471 GO:0016491
Lsi09g01291 629 PRINTS Aldo-keto reductase signature 181 205 IPR020471 GO:0016491
Lsi09g01291 629 PRINTS Aldo-keto reductase signature 54 72 IPR020471 GO:0016491
Lsi09g01291 629 Pfam Aldo/keto reductase family 11 244 IPR023210 -
Lsi09g01291 629 Pfam Aldo/keto reductase family 308 599 IPR023210 -
Lsi09g01291 629 SUPERFAMILY NAD(P)-linked oxidoreductase 11 247 IPR036812 -
Lsi09g01291 629 PANTHER ALDO-KETO REDUCTASE 4-RELATED 9 269 - -
Lsi09g01291 629 PANTHER ALDO-KETO REDUCTASE 4-RELATED 283 628 - -
Lsi09g01291 629 Gene3D - 4 275 IPR036812 -
Lsi09g01291 629 Gene3D - 293 629 IPR036812 -
Lsi09g01291 629 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 283 628 - -
Lsi09g01291 629 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 9 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01291 - - - qsu:112016410 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00038 Lsi-Chr7:440251 Lsi09g01291 Lsi-Chr9:20768964 2.23E-57 dispersed
Lsi09g01291 Lsi-Chr9:20768964 Lsi11g00039 Lsi-Chr11:455948 1.58E-117 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g561 . . . . . . . . . Cmo17g00198 . . . . . . . . . . . . . . Cla06g00614 Cam06g0652 Cec06g0655 Cco06g0659 Clacu06g0640 Cmu06g0634 Cre06g1401 . . . . . Csa02g01121 Chy05g00378 . . . . . . . . . Sed09g0732 . . . Cma17g00206 . Car17g00181 Cpe12g00174 . Bhi12g02241 Tan06g2480 Cmetu05g1903 . . . Lcy13g0314 . . . . . . . Lsi09g01291 . . Cme05g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001019 1 1 1 3 1 3 1 3 3 2 2 3 4 2 3 1 3 2 2 3 2 4 3 2 3 2 2 3 9 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01291 Lsi_Chr09 FPKM 21.724745 25.417961 21.850267 22.577038 21.34771 20.887894 23.995506 32.388905 30.561371 31.826389