Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01292 ATGAGAGAGTTTCTGTTCCTTCCGCCGGCCATTGCCTTTAAATTTGGAGCTCCGTGGTTAATCGGAGCATATTCTCGACAATTCAACTCAGTGAACGAGTTCAGAGAGCAGGCTTGGTTTATGGACGATAGCAATGAAGACCAGAGGCTTCCTCATCACCGAAACCCTAAAGAGTTCGTCTCCACGAACCAATTGGCAGAATTAGGTGTTTTGTACTGGAAATTGAACCCCAAGGTATATGAAAACGATGAGGAATTGAAGAAAATCAGAGAGGACAGGGGATACAACTACGTGGATTTACTTGATATATCTCCAGAGAAACTTCCCAATTACGAAGGGAAGTTGAAAGATTTCTACACAGAACACATTCATGCCGATGAGGAAATTCGTTACTGTTTGGATGGAAGTGGCTACTTCGATGTCCGGGACAAGAACGACCGTTGGATTCGAATCTGGATTAAGCCCGGTGATCTTATCATCTTGCCGGCCGGTATCTACCATCGTTTTACTCTGGACACCAATAATTATGCCAAGTTAATGAGGCTGTTCCAGGGAGAGCCAATTTGGACCCCGTTTAACCGACCACAAGAGCAGCACCCAGCAAGGAAAGAGTACCTCAAGTCCTTCACTGAGAAAGCTGGAGTGGGACTTGAGGCTCATTAA 663 45.4 MREFLFLPPAIAFKFGAPWLIGAYSRQFNSVNEFREQAWFMDDSNEDQRLPHHRNPKEFVSTNQLAELGVLYWKLNPKVYENDEELKKIREDRGYNYVDLLDISPEKLPNYEGKLKDFYTEHIHADEEIRYCLDGSGYFDVRDKNDRWIRIWIKPGDLIILPAGIYHRFTLDTNNYAKLMRLFQGEPIWTPFNRPQEQHPARKEYLKSFTEKAGVGLEAH 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20776421 20777711 - Lsi09G012920.1 Lsi09g01292 670905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01292 220 SUPERFAMILY RmlC-like cupins 37 209 IPR011051 -
Lsi09g01292 220 Pfam ARD/ARD' family 37 191 IPR004313 GO:0010309
Lsi09g01292 220 CDD cupin_ARD 63 191 IPR004313 GO:0010309
Lsi09g01292 220 Gene3D Jelly Rolls 27 213 IPR014710 -
Lsi09g01292 220 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 29 213 - -
Lsi09g01292 220 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 36 204 IPR027496 GO:0016491|GO:0019509
Lsi09g01292 220 PANTHER ACIREDUCTONE DIOXYGENASE 29 213 IPR004313 GO:0010309
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01292 K08967 mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] - csv:101204622 371.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01636 Lsi-Chr5:24013655 Lsi09g01292 Lsi-Chr9:20776421 2.92E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g555 . . Bda03g00867 . . . . . . . . . Car06g01188 . Sed02g1341 . . Bhi01g00761 Tan10g0792 Cmetu06g0848 Lac12g2248 Hepe05g1585 . Lcy11g1580 . . . . . . . . . Cone7ag0277 . . Csa02g01124 . Cme06g00576 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00510 Cam05g0561 Cec05g0573 Cco05g0571 Clacu05g0558 Cmu05g0529 Cre05g0598 Lsi09g01292 Csa03g01292 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01292 Lsi_Chr09 FPKM 7.78514 8.011506 6.715316 7.536023 6.419862 8.141653 7.107442 6.436827 6.018053 6.853324