Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01294 ATGAGTGCCGGCGCGACGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACAATGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGTTGAACCAGACAACAATGTCACCAGTCCCAGAGATCAATACGATGCAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGGAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCCCTTGGGTGGAGCTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTTCCAGTGACAGAGATGACTTTTTTCCTCCTAGTGCTGCCATCTATCGAAATGTGCACACAGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGATATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGCCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGGCTTCGTTGGAACAGCTGAGGATCAGCCAAAACTTGCATGTTTTCCTGTCGATCTTAATGTCAAAGGTAGAGCTATAGAGCTTTTATATTAG 939 45.47 MSAGATTFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVNSNQGDSPKEPSDDAQVTMSVDESAYSNVETAKSTPEDPPVEPDNNVTSPRDQYDANGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHPLGGAAACQSPPCLLQTSSDRDDFFPPSAAIYRNVHTDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLSSSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKGFVGTAEDQPKLACFPVDLNVKGRAIELLY 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20779904 20783983 - Lsi09G012940.1 Lsi09g01294 670907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01294 312 Pfam Jas motif 217 234 IPR018467 -
Lsi09g01294 312 MobiDBLite consensus disorder prediction 72 132 - -
Lsi09g01294 312 ProSiteProfiles Tify domain profile. 132 167 IPR010399 -
Lsi09g01294 312 SMART tify_2 132 167 IPR010399 -
Lsi09g01294 312 MobiDBLite consensus disorder prediction 73 110 - -
Lsi09g01294 312 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 3 276 IPR040390 -
Lsi09g01294 312 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 3 276 - -
Lsi09g01294 312 Pfam tify domain 138 166 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01762 Lsi-Chr9:26350855 Lsi09g01294 Lsi-Chr9:20779904 8.83E-07 dispersed
Lsi09g01294 Lsi-Chr9:20779904 Lsi06g00354 Lsi-Chr6:3869414 1.75E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25939 PF06200 tify 2.70E-15 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01294 - - csv:101204377 574.704