Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01301 ATGGCGGAAGCAGGGACAGGATCAGCTTCAGGTAACAGTGGGGGAGGGCCGGAGCCGTCGCTGAAAGACAAAGGCAATGAGTTTTTTAAAGCAGGGAACTATCTCAAAGCTGCTGCACTTTACACCCAAGCTATCAAACTAGACCCTTCGAATCATGCTCTTTATAGCAACCGTGCTGCTGCATTTCTGCATCTAGTTAAGCTTAACAAAGCACTTGCGGATGCTGAGATGACAATTAAATTGAGCCCACAGTGGGAAAAGGGATATTTCAGAAAGGGATGCATCTTGGAAGCAATGGAAAAATATGACGATGCCTTGTCTGCATTTCAAACGGCCTTGCAGTATAATCCACAAAGTGCAGAAGTCTCAAGAAAAATTAAAAGGGTTTCACAATTGGTGAAAGATCAAAAGAGGGCTCAAGAAGTGGAGAAAAAGAGATCAAATATAGATATGACGAAGCACTTGGATAAGCTGAAATCTGATCTGTCTGAAAAATATGGCTCTGAAGAATGCTGGAAAGACATATTTTCTTTTCTTGTTGAGACCATGGAGGCTGCTGTGAGATCATGGCATGAAACTTCTAATGTGGACGCTAAAGTGTACTATCTACTTGATAAGGAAAAGACGGATACTGAAAAATATGCTCCAGTCGTAAACATTGATAAGGCATTTGAATCACCCCACACACATAGTGATTGCTTTCAATTTTTGAGGAAATATGCCGAGGATTCAGTCTCTCGAGCAGCATGCTTAGTAACTCCCAAAAGCTTGATATCCTATCCACAGCTTGAAACCCCTTCCTTAAGGAAGCTATGGTTTGTTCCTAGTTCTAGTGAACTGGGACGACCATTATGCCGGGATCCTGAGGTTCTGGATATCGCTGCACATGAATTACTGCCGCGCATATTTAAAGAAAAGCTGCCAAGCACTTAG 933 42.55 MAEAGTGSASGNSGGGPEPSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEMTIKLSPQWEKGYFRKGCILEAMEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDQKRAQEVEKKRSNIDMTKHLDKLKSDLSEKYGSEECWKDIFSFLVETMEAAVRSWHETSNVDAKVYYLLDKEKTDTEKYAPVVNIDKAFESPHTHSDCFQFLRKYAEDSVSRAACLVTPKSLISYPQLETPSLRKLWFVPSSSELGRPLCRDPEVLDIAAHELLPRIFKEKLPST 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20871200 20875911 - Lsi09G013010.1 Lsi09g01301 670914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01301 310 Pfam Tetratricopeptide repeat 87 118 IPR001440 GO:0005515
Lsi09g01301 310 ProSiteProfiles TPR repeat profile. 18 51 IPR019734 GO:0005515
Lsi09g01301 310 MobiDBLite consensus disorder prediction 1 15 - -
Lsi09g01301 310 Pfam TPR repeat 25 63 - -
Lsi09g01301 310 SUPERFAMILY TPR-like 21 129 IPR011990 GO:0005515
Lsi09g01301 310 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Lsi09g01301 310 MobiDBLite consensus disorder prediction 1 22 - -
Lsi09g01301 310 SMART tpr_5 52 85 IPR019734 GO:0005515
Lsi09g01301 310 SMART tpr_5 18 51 IPR019734 GO:0005515
Lsi09g01301 310 SMART tpr_5 86 119 IPR019734 GO:0005515
Lsi09g01301 310 Gene3D Tetratricopeptide repeat domain 19 132 IPR011990 GO:0005515
Lsi09g01301 310 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 20 306 - -
Lsi09g01301 310 PANTHER TPR REPEAT CONTAINING PROTEIN 20 306 IPR045248 GO:0006457|GO:0030544|GO:0051879
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01301 - - - csv:101202929 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00036 Lsi-Chr2:379730 Lsi09g01301 Lsi-Chr9:20871200 5.21E-06 dispersed
Lsi07g01335 Lsi-Chr7:19532950 Lsi09g01301 Lsi-Chr9:20871200 2.40E-18 dispersed
Lsi09g01301 Lsi-Chr9:20871200 Lsi11g01694 Lsi-Chr11:25121995 7.72E-08 dispersed
Lsi09g01301 Lsi-Chr9:20871200 Lsi11g01649 Lsi-Chr11:24801333 7.20E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g544 Blo01g00117 . . Bda08g00245 . . . Bma05g01100 Cmo08g01105 Cmo17g00208 . . . . . . . . . . . . . . Cla06g00604 Cam06g0642 Cec06g0645 Cco06g0648 Clacu06g0629 Cmu06g0623 Cre06g1390 . . Cone7ag0272 Cone4ag0265 . Csa02g01134 Chy05g00391 . . . . . Bpe05g00892 . . . . . . Cma08g01131 Cma17g00217 Car08g01012 Car17g00193 Cpe12g00184 Cpe17g00158 . . . . . . . . . . . . . . Lsi09g01301 . . Cme05g00478
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007919 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01301 Lsi_Chr09 FPKM 12.498648 17.308565 11.687785 13.155462 14.707284 15.544355 16.059265 18.770357 17.295996 18.025173