Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01306 ATGGGTACAGTTGGTGATAATTGGGGAGACGATTGTTCTGTCATTAAAGACAAAGGAGAGATTTCCTATATTGACTACGAAGATGATAAATCTGTTTGCAGTTATAATCCTATTGAGGAAGGTCCAATTATTGTTTCAGTGCCATTTGCTTTTGTTAATGGCAAACCTCAATCAGTTTTCATCGGAGAAACAGTGGCTGATGCGATTACCATCAAAAACACCACCGATGAATCGGTGGACCTATGGGCTGTTAATATTTATGCATCCAATCCCGAAAACTCGTTTACACTTTCTCTAATGGAGCCCCCAGGTCCAAATGCTGACATAGAAAGTGTACAAGCTTTCTTGGAGTCTTTTTCATTGGAGGATAGAATGATCCATCCGGATGAGACTCTTACTATATGGCTGTCTTGCAAGCCAAAGGAAATTGGCTTGCACACAACCGTCGTGCATTTTGATCTTGGCAATGAAAGAATAGAACGAGTGTCTTTTCTTTTAGCAGATGATAAGATTTCACAGTCGTCGGCTTCTAGGAAGCCATATTCAAGAGACAGGAGAAAGAAGCATGAGGCAGTAGATTCATATATTCCTGGCTCACGTCCTATTAGAACAAAAGGTAAGGGATTAAAAAATTTCCTTCTCCAATATGAAATCCCTAGTAGAATTAGAGATGAACTTAGCAGAAAGGAGATTCCTAGTGCTGTTCGAGAAGGACTTAAAAGAGATACCTACATTTCCTATTTCATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGATATGAGAGCTTATGATATGGAGCGTGTTACTATGAAAAGAAAGGGACATAACTTTTTGTCCCTCGAGGTTCCGGGGCTCGCTGAGAGAAGGCCTTCACTTGTCCATGGTGACTATATCCTTGTCAAGATGCCTTTTGGCTCGGTTTCTGCTTATCAGGGGTATATTCATCACGTTGAAGCTGATGAAGTTTTCCTAAAATTTGCTCCAGAATTTCACATTAACCACAGAGAGGACGATCTGTATAATGTCCAGTTTACCTATAACAGAATTAACATGAGAAGGTTCTATCAGGCTATTGATGCTGCTGAAAGTTTAGCAAAGGAGTTTCTGTTCCCATACGAGTTTTCAGAAAGAAGATATATCAAGACTACTCCGCTGGTGCCTATAACTCAGAACATCAATGAGGAACAGATGCGTTGTGTTCAGATGATTCTTGGTTGCAGAGGAGCACCACCTTATTTAGTGCATGGACCTCCTGGTACTGGTAAGACTCAAACCTTGGTGGAAGCTATCCTCCAACTCTACACGACACGAAAGAATGCTCGGATACTTGTTTGTGCTCCTTCAAATAGTGCTGCAGACCACATACTGGAGAAGCTTCTCAGTCAGGAGGGTGTTGAAATTTGTGATAATGATGTTTTCAGGCTAAATGCGAGCACACGGCAATATGAGGAAATCAAGCCTGACCACCTCCGGTACTGCTTCTTTGATGAACAAATTTTCAGGTGTCCTCCACGCAATGCCCTAATCCACTATAGGATTGTTGTTTCAACTTATATGAGTACTTCCCTTCTTTATGCTGAGGATATCAAGCGTGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAATCTATAATTCCTGTATCCAACCTCTGTCTAAGGAGAACAGTTGTCGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCCAAGGAAGCAGAAATTTATGGATTGGGTAAATCATATTTGGAAAGGCTTTTTGAAAGTGAATATTACAGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCAGATATCTTGCATCTTCCTTCTACATTGTTCTATGGTGGTGAACTAATTGCATGTAAAGATGAGAAAAGTCTCCTCACGGATACAGCAGATATTCTTCAAGTACTTCCTAATAAAGAGTTCCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGAGGGAAGGCAACAATCCATCATGGTTTAACCGAATTGAGGTAAGCAAGGTGGTTGAGATTATAAGGAAACTGACTGATGGTGGAAACCTAAGCGAGGAAAATATCGGGGTCATAACACCCTATCGACAACAAGTGCTCAAAATAAGGAAAGCCCTTGATAGCCTGGATATGCTTGATATAAAGGTCGGTAGTGTAGAACAATTTCAAGGACAAGAGAGGCAAGTGATTATTGTTTCTACTGTTCGATCAACAATCAAACATAATGAGTTTGACAGAACCTACTGTTTGGGGTTTTTAAGTAATCCAAGAAGGTTTAATGTGGCTGTTACCCGGGCTATATCTCTCCTGGTCATAATTGGCAATCCCCATATAATCAATCAGGATGTGTATTGGAACAAGCTGTTATGGCAGTGTGTTGACAAAGATTCATACCAAGGTTGTCCCCTCCCTGAAAGGCAGGACCCCACAGATGAGGAACAACCCTGCAATGACGAAGAGGGACAAAGTTCGGGATTTGAAGGAACAGACCAGAATCAAGGGCTGTCGGAACCGGCACTGACACCGGAGAAGGAATTTTCTGAACCGGTTGTTGATGAAGCTGAATGGTCTGATGGGTGGAATCAACTCTGTGACCCAGATTTCTACACCATGGGTAGGTTACACTGCGATACAAAGGATGATGGAGACGGCGGCGATTCATCTGCAGGTGCTGATGGTGTTACGGTTGCAGATGGTGGTAAGCCCGTATCAGGAGATGGTGTACTATTCTCGTCAGCTACATGGTTGCAAGCAAACATTTGA 2826 41.83 MGTVGDNWGDDCSVIKDKGEISYIDYEDDKSVCSYNPIEEGPIIVSVPFAFVNGKPQSVFIGETVADAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPGPNADIESVQAFLESFSLEDRMIHPDETLTIWLSCKPKEIGLHTTVVHFDLGNERIERVSFLLADDKISQSSASRKPYSRDRRKKHEAVDSYIPGSRPIRTKGKGLKNFLLQYEIPSRIRDELSRKEIPSAVREGLKRDTYISYFMTLLNMEEIQLEEDMRAYDMERVTMKRKGHNFLSLEVPGLAERRPSLVHGDYILVKMPFGSVSAYQGYIHHVEADEVFLKFAPEFHINHREDDLYNVQFTYNRINMRRFYQAIDAAESLAKEFLFPYEFSERRYIKTTPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTRKNARILVCAPSNSAADHILEKLLSQEGVEICDNDVFRLNASTRQYEEIKPDHLRYCFFDEQIFRCPPRNALIHYRIVVSTYMSTSLLYAEDIKRGHFSHIFLDEAGQASEPESIIPVSNLCLRRTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFESEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDEKSLLTDTADILQVLPNKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIIRKLTDGGNLSEENIGVITPYRQQVLKIRKALDSLDMLDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAVTRAISLLVIIGNPHIINQDVYWNKLLWQCVDKDSYQGCPLPERQDPTDEEQPCNDEEGQSSGFEGTDQNQGLSEPALTPEKEFSEPVVDEAEWSDGWNQLCDPDFYTMGRLHCDTKDDGDGGDSSAGADGVTVADGGKPVSGDGVLFSSATWLQANI 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20930178 20935574 + Lsi09G013060.1 Lsi09g01306 670919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01306 941 Pfam AAA domain 591 797 IPR041679 -
Lsi09g01306 941 Gene3D - 619 823 IPR027417 -
Lsi09g01306 941 PANTHER RNA HELICASE SDE3-RELATED 4 841 - -
Lsi09g01306 941 MobiDBLite consensus disorder prediction 840 859 - -
Lsi09g01306 941 Pfam AAA domain 395 495 IPR041677 GO:0004386
Lsi09g01306 941 Pfam AAA domain 511 583 IPR041677 GO:0004386
Lsi09g01306 941 MobiDBLite consensus disorder prediction 822 872 - -
Lsi09g01306 941 CDD SF1_C_Upf1 621 813 IPR041679 -
Lsi09g01306 941 CDD DEXXQc_Helz-like 396 620 - -
Lsi09g01306 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 810 IPR027417 -
Lsi09g01306 941 MobiDBLite consensus disorder prediction 902 926 - -
Lsi09g01306 941 Gene3D - 312 606 IPR027417 -
Lsi09g01306 941 PANTHER DNA2/NAM7 HELICASE FAMILY 4 841 IPR045055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01306 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - csv:101209925 1644.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00860 Lsi-Chr9:9920577 Lsi09g01306 Lsi-Chr9:20930178 7.52E-57 dispersed
Lsi09g01306 Lsi-Chr9:20930178 Lsi11g00028 Lsi-Chr11:304024 2.63E-27 dispersed
Lsi09g01306 Lsi-Chr9:20930178 Lsi07g01234 Lsi-Chr7:17996323 6.40E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01306 Lsi_Chr09 FPKM 4.84366 6.34895 6.416146 8.468372 10.450733 9.240223 10.862636 8.579659 8.338709 9.107583