Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01309 ATGAGGCAGAGACAGTCTCGACCGCCGCTTGCGAGTGACCGGATTGCGTTACAGCAATCGGCAGTTGGGGAAGTGCCATTGGCAGAGCTGTTGGTAACAAAGTTCAAGCAAGGGCTGAAGCTTGAGAGCATGGAGGCACTACATGGCACATTCATCTGCCCATTCACTGGAAGAATAGCCACCAAAGCCAAGGCCAAGAATATGGAAGCTAGAAAAATGGAAGTGAGTATTGTTATGGCAATGGTGGCCTTGTTGTTATGGACAGGAGAAGCAATAGCACAGTCATCGGATTGTAGCAATGTGTTGATTAGCCTCTCGCCTTGCCTCAGTTACATCACTGGCAACTCCTCCATGCCGTCTCCGACCTGCTGCTCGCAGTTGGCCACCGTCATCAGCTCCCAACCGCAGTGCCTTTGTCAAGTCCTCAATAATGGCGGCGGAGCCTCCGCGCTTGGGGGGCTCAATGTCAACCAAACTCTGGCTCTTGCACTCCCTGGTGCTTGTCGTCTTCAAACTCCGCCCATTTCCGGCTGTAACGTAGCCGCTTCTCCGACAAACGACAGTCCAGCAGAAGCACCAGAATCTCCAAGCGAGGAGCCTACCGATACGACTAAAACTAGAACAATC 627 52.63 MRQRQSRPPLASDRIALQQSAVGEVPLAELLVTKFKQGLKLESMEALHGTFICPFTGRIATKAKAKNMEARKMEVSIVMAMVALLLWTGEAIAQSSDCSNVLISLSPCLSYITGNSSMPSPTCCSQLATVISSQPQCLCQVLNNGGGASALGGLNVNQTLALALPGACRLQTPPISGCNVAASPTNDSPAEAPESPSEEPTDTTKTRTI 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20937969 20941991 + Lsi09G013090.1 Lsi09g01309 670922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01309 209 SMART aai_6 98 178 IPR016140 -
Lsi09g01309 209 MobiDBLite consensus disorder prediction 179 209 - -
Lsi09g01309 209 CDD AAI_LTSS 105 170 - -
Lsi09g01309 209 Gene3D - 95 176 IPR036312 -
Lsi09g01309 209 MobiDBLite consensus disorder prediction 179 197 - -
Lsi09g01309 209 Pfam Probable lipid transfer 90 178 IPR016140 -
Lsi09g01309 209 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 97 180 IPR036312 -
Lsi09g01309 209 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 77 194 IPR043325 -
Lsi09g01309 209 PRINTS Plant phospholipid transfer protein signature 118 132 IPR000528 GO:0006869|GO:0008289
Lsi09g01309 209 PRINTS Plant phospholipid transfer protein signature 97 113 IPR000528 GO:0006869|GO:0008289
Lsi09g01309 209 PRINTS Plant phospholipid transfer protein signature 155 172 IPR000528 GO:0006869|GO:0008289
Lsi09g01309 209 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 2-LIKE ISOFORM X1 77 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01309 - - - cmo:103489675 200.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00430 Lsi-Chr5:5462494 Lsi09g01309 Lsi-Chr9:20937969 2.39E-08 dispersed
Lsi05g01618 Lsi-Chr5:23842001 Lsi09g01309 Lsi-Chr9:20937969 1.56E-39 dispersed
Lsi06g00432 Lsi-Chr6:4726013 Lsi09g01309 Lsi-Chr9:20937969 2.15E-11 dispersed
Lsi06g00448 Lsi-Chr6:4905598 Lsi09g01309 Lsi-Chr9:20937969 5.33E-11 dispersed
Lsi09g01309 Lsi-Chr9:20937969 Lsi10g00976 Lsi-Chr10:14104907 4.24E-13 dispersed
Lsi09g01308 Lsi-Chr9:20937355 Lsi09g01309 Lsi-Chr9:20937969 1.37E-08 tandem
Lsi05g00944 Lsi-Chr5:16567978 Lsi09g01309 Lsi-Chr9:20937969 4.14E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01309 Lsi_Chr09 FPKM 19.859945 20.105005 27.929596 28.422329 50.437759 52.147346 48.631409 56.416809 55.215477 50.721775