Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01313 ATGGCAGTTCCAGTAGCGAAAACAGCGTCTCTTGCCCACATAGCTAGAGAATCTTCGGATATTCATCGCCTTTCTCAATTCTACAAAGAGGTCTACTATTTTCTATCTTCTTCTACCTTCTTTTCTTCCATTGACAACAGCTTTGTTTATGGTAGTTGTTATTTGCTGGTGCAGATGTTTGGATTCGAAGAAATTGAGAGTCCAAATTTCGGTGAACTCAAGGTTATTTGGCTAGATCTTCCTTCTGCCTTTCAACTTCACATCATCGAGAGAGACCCTAAATCCAAGCTTCCCGAAGGTCCATGGAGCGCCACGTCACCCGTTGCTGACCCTAGCCATCTTCCCCGAGGTCACCACATCTGCTTCTCTGTTTCCGCTACCAATTTCGATTCTGTCGTTCATGCTCTCAAGGAACAATTCTTTGAAAATATTTTCTCACAGTTTATAGAAAGTTCGCACTTCCCTGAAAAGGGCATCCAGACTTTTGAGAAGACCCTACCAAATGGGAAGGTAAAGCAAGTCTTCTTCTTTGATCCCGATGTTGGTAAGCAATCCAAGTCTATGCAGGTAATGGATTGGAGATTGCGAGTCGGGAAGATTGAGTAA 606 43.4 MAVPVAKTASLAHIARESSDIHRLSQFYKEVYYFLSSSTFFSSIDNSFVYGSCYLLVQMFGFEEIESPNFGELKVIWLDLPSAFQLHIIERDPKSKLPEGPWSATSPVADPSHLPRGHHICFSVSATNFDSVVHALKEQFFENIFSQFIESSHFPEKGIQTFEKTLPNGKVKQVFFFDPDVGKQSKSMQVMDWRLRVGKIE 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21011125 21012455 + Lsi09G013130.1 Lsi09g01313 670926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01313 201 PANTHER GLYOXALASE FAMILY PROTEIN, EXPRESSED 154 182 - -
Lsi09g01313 201 PANTHER GLYOXALASE FAMILY PROTEIN, EXPRESSED 5 141 - -
Lsi09g01313 201 Gene3D - 9 182 IPR029068 -
Lsi09g01313 201 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 57 180 IPR029068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01313 - - - csv:101211159 232.261
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g509 . Blo12g00333 Bda03g00880 . Bpe04g00825 . Bma04g00778 . . Cmo17g00217 . . . . . . . . . . . . . . Cla06g00590 Cam06g0629 Cec06g0632 Cco06g0635 Clacu06g0615 Cmu06g0608 Cre06g1376 . . . . . . . . . . . . . . . . Sed04g1910 . . . Cma17g00228 . Car17g00207 Cpe12g00193 . Bhi12g01702 Tan06g2516 Cmetu01g0171 Lac12g2273 Hepe03g0205 . Lcy13g0288 . . . . . . . Lsi09g01313 . . Cme01g01570
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012331 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 29