Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01321 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGATTAGGAGGCGCCGGTTCTTCGGGCTCACGCTTGCTTAATGCAAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGTTGCCTCATCGTAGACGAGTTGGTCCTGAAACTATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTGTGGATGAGAGTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTACGTTAAGCGGAATGATGACGGTTTAATCAACAGGATGGATGTGGATGGTCTACGAAGAAATATGGACACCTTAGATGTCTTTGAGTTCAACGAGTACGATGAAATTGATAGTGAGACTAGGCGGAGGAAGGATTTTAATGACAGTGGAGAAAGACGGTTTGTTGGTTCCATGAAACTGCCTCAAAGTGGTGTCGAGAGGGAATTTGGTACCACTTCTGGCAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATACTGAACAGACCAATAGCTTTGATCGGGACAGGCCTCCCAGAAGGATTAATTATGACTCAGAGGATGACGGACCTCACCTCCCAACACCTTTGTTGAGAGATAAGTTTAGGGGTCATTCTGATGAAGCAATCAGGGTTCAGGGGAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAAAATGTGAGTGGAGCTTCCGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGAGTCTTAGGGAAGATACTCTGAAGAGGAAAGTGTTAGTTTCTCCTTCACTTCACCCAGAACCTAACCCCAATGTGAAACAGGATCTCATTTCTAAACCCGATAAAGACCATACAGATTTTCAAACTTCGGCATCAACAAAAAATGTAAAGGGTTGCAGTTGGGATTCAGGTGACAGCAGTGTGTCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCACAAATCTGCCAAGAAGGCAAGTTGTGAAGTTGAAAAAATTCCATGTGAAGAGACTCCCCCAAGTACAGCAAAGGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAGCAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGTTGGAAAATTGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTGAATGAAGAAGGAGCAGAGGCTAAACCTAGTGCTGATGGTTCATTTACGCCAATATCAGATGATATTCTTAGTCAATTAACCAGGAAAACTAGAAAGAAAATTGAGAAAGAATGGAAAAATAAGCGGAGAGATGATAGTGACAGCGAAAATGCTAAAGAAGCAAGTGCACTAAGATCTGCTGGTACGAAAAATGACATGGACAGCATGGACAGTGACAGCAATGAAGAAAAGTTAAGCTCTTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTAAACGAGAATGGGTTTCCCAGTGTCAACTCCAAAGGTCAAAGTTCTAGTAAGTATTCGCGTGATACCATTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTGGTTCTAGTAGGGGATTAGATTCAGAGAATGATGGATATGTTCCATATACTGGTAAAAGGACACTGCTTTCCTGGCTTATCGATTCCGGAACTGTGCAGTTGAGCCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACCAGAGATGGCATTCATTGTGGTTGCTGTAGCAAAATCCTCACTGTCTCGAAGTTTGAGATACATGCTGGTAGCAAATTACGCCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCTCTTCTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCTAAACGCCTCAGTTTCCACACAGTTGAAATTGATGGTGATGATCCAAATGATGATACATGTGGCATCTGTGGAGATGGTGGAGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCTGAGTTGTTTAGATATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAGTGTTGATATTTCTCAGGGAGACGATACCATTGTTCCTGAGATATCTACTTGCATGTTATGCGAGAAAAAATTTCATGAATCCTGCAATCCAGAGATGGATACTCCTGTTCATTCCAATGCTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGAAGTATCTAGGGGTGAAACATGAATTAGATGCAGGATTCTCATGGTCTCTTATCCGTAGAACAAGTGAAGATTCGGATGTATCTGTTCGTGGACTTTCTCAAAGGATTGAATGTAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGATAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGCTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGTACCCGCCATATTTATAGGCGTCAAGGAATGTGCCGTCGCCTTTTTTGCGCAATTGAATCTGCTCTCCGCACGCTTAAGGTTGAGAAACTGATTATACCGGCAATTGCTGAGCTCATGCACACTTGGAATGTGATTTTTGGCTTTAGTCCTCTGGAGCAATCACTCAAGCAAGAAATGAGATTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCCAAGAGACATTTGTTGAGGAGAATACTTATACTGGCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTTGGTAGTCCTAAGATGGATACAGAGACCTCATCTGGCCAGGAACCTCAAAGTTGTGATGACACTGAACAGCATCACTCTAGGGAGAAAACAAATGAAGCAGCTGTCACTAACCCAAATCCTGAATCCGCGTCTGTTTCTCTAAATGATACTTCTGCGGTAAATAGTCCTCTGGATGCATTTTGTGAAGTTAAAACTTCATGTTCTCCAATGCAAACTGTAAATTTGGATTCTGATTCTGGTGATAAAGTTAAATGTTCGTCTCCATCTGATTCAACTGACTCTCTTCAACGCAAAAATAAGCCTGGAATTCAGCATGGTATAGAGGACCATGTGCAGTCCACTTCCCAATGTATGAAAGCTGATACTTCTTCAGACAGTTTTCTTGAACCTAAGGTTGAAGTTTCAGATGAAGGAATCATTTGTTCCAACTCTCATGCTGGGCACGAGTTGGCTGACTCCGGTTCTGAGAAGAAATCTTTTCCTCCTGCAATAGGCAATGGCACCGATGAGTTTGTAAATGACATACCCGTAGTGAATTCTCCTGAAGATGATAAGTCATTCAATAAGATTAATGGTCATAAATTTTGCGAAGACGATGTCCATGCTAATGCTCTTAAACCTGCTCAGTCGGTTGAAAATCCACTTGTCTCTTCTGCTAGTTTGTGTGGCACTAATGGACGCCCCTTCGAAACTACATCTGATTGCAAAAATGCAATACCTTATGGGAAAGAAACTATTTCTGATGGAATTTGTGAAAGTGAAAATTCTCTACAGTCATGTGGGGCAAAAGCCAGAAGTGATTCGCAGGAAGAGAGAGCTGAATCTGGTTCGATTTGA 3912 41.67 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSGSRLLNAKKEKKRPRLVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFGKDVVDESGSIRKKDRLQYVKRNDDGLINRMDVDGLRRNMDTLDVFEFNEYDEIDSETRRRKDFNDSGERRFVGSMKLPQSGVEREFGTTSGRHALVDKRKNLYTEQTNSFDRDRPPRRINYDSEDDGPHLPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDMYDHRKLEESRKSLREDTLKRKVLVSPSLHPEPNPNVKQDLISKPDKDHTDFQTSASTKNVKGCSWDSGDSSVSLKPRKKVVEAHKSAKKASCEVEKIPCEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIEKEWKNKRRDDSDSENAKEASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLNENGFPSVNSKGQSSSKYSRDTIVKSSSGSNSRILHGRKGRKLGLLVRGSSRGLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHLSCLDIQIPPGDWHCPNCTCKYCGVASVDISQGDDTIVPEISTCMLCEKKFHESCNPEMDTPVHSNASVTSFCGKNCREKYLGVKHELDAGFSWSLIRRTSEDSDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRTLKVEKLIIPAIAELMHTWNVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETFVEENTYTGSGAKQTDCRSTEFGSPKMDTETSSGQEPQSCDDTEQHHSREKTNEAAVTNPNPESASVSLNDTSAVNSPLDAFCEVKTSCSPMQTVNLDSDSGDKVKCSSPSDSTDSLQRKNKPGIQHGIEDHVQSTSQCMKADTSSDSFLEPKVEVSDEGIICSNSHAGHELADSGSEKKSFPPAIGNGTDEFVNDIPVVNSPEDDKSFNKINGHKFCEDDVHANALKPAQSVENPLVSSASLCGTNGRPFETTSDCKNAIPYGKETISDGICESENSLQSCGAKARSDSQEERAESGSI 1303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21057745 21067961 - Lsi09G013210.1 Lsi09g01321 670934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01321 1303 ProSiteProfiles Zinc finger PHD-type profile. 704 748 IPR019787 -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 367 381 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 471 564 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 361 381 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 514 563 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 30 61 - -
Lsi09g01321 1303 ProSitePatterns Zinc finger PHD-type signature. 707 745 IPR019786 -
Lsi09g01321 1303 SUPERFAMILY FYVE/PHD zinc finger 695 751 IPR011011 -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 1011 1042 - -
Lsi09g01321 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 806 IPR013083 -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 1097 1126 - -
Lsi09g01321 1303 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 885 959 IPR016181 -
Lsi09g01321 1303 Pfam PHD-finger 707 748 IPR019787 -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 471 488 - -
Lsi09g01321 1303 CDD PHD2_CHD_II 707 745 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 314 330 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 190 223 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 285 330 - -
Lsi09g01321 1303 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1184 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 44 58 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 489 503 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 1057 1074 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 1097 1124 - -
Lsi09g01321 1303 MobiDBLite consensus disorder prediction 1011 1074 - -
Lsi09g01321 1303 SMART PHD_3 706 746 IPR001965 -
Lsi09g01321 1303 Pfam Tify domain binding domain 629 679 IPR032308 -
Lsi09g01321 1303 PANTHER PHD FINGER FAMILY PROTEIN 1 1184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01321 - - - cmo:103489665 2274.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01321 Lsi-Chr9:21057745 Lsi03g01970 Lsi-Chr3:31110745 8.44E-36 dispersed
Lsi04g01486 Lsi-Chr4:22539516 Lsi09g01321 Lsi-Chr9:21057745 7.78E-72 transposed
Lsi04g02022 Lsi-Chr4:27308999 Lsi09g01321 Lsi-Chr9:21057745 6.51E-89 transposed
Lsi06g00548 Lsi-Chr6:6915363 Lsi09g01321 Lsi-Chr9:21057745 1.74E-10 transposed
Lsi10g01200 Lsi-Chr10:16269007 Lsi09g01321 Lsi-Chr9:21057745 3.00E-10 transposed
Lsi10g01441 Lsi-Chr10:18485166 Lsi09g01321 Lsi-Chr9:21057745 3.87E-85 transposed
Lsi02g02282 Lsi-Chr2:29380985 Lsi09g01321 Lsi-Chr9:21057745 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25942 PF16135 TDBD 4.00E-22 No_clan Lsi TR