Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01323 ATGTTTACATTAGAGGATTTAAATCACATGAAGTCGCTAACACACATAAATGTCACACTCATAACCAATTCCAACCCCTCCACCAACATCACCTTCCAATACGTCGCCCTCGCCGACCCCACCAAGCAATCCGTCCTCTCATGGCTCTCAAACCCCAAAACCCCGCCGCCGCCCCGTCGCGCCATCGCCACCGTCCGTTTCAACAAAGCCACACACGAGATCCTCATAGACCTACACAAAAAAACCGTGATCTCGAATCGGGTCTACTCCGGTCCAGGGTTCGCGCCGTACACATTCGAGGAGCAGTTCGCGGCCGCCGCTCTGCCGCCGTCCCACCCGCCGTTCGCGGCGGCGATGAAAAAAAGAGGGCTGAAAATGGAAGAGGTTGTTTGCGCGTGTTTTAGCGTTGGGTGGTTTGGGGAAAAAAGGAAAGTGGAAAAGAGGATTGTGAAAGTACAGTGCTATTACTTGGATGGGAGTGTGAATTTGTACATGAGGCCTGTGGAAGGAGTGACGGTGACCGTTGATCTTGATGAGATGAAGATTATTGAGTTTCGTGATAGATATGTGGTTCCGATTCCCAAGGCTGGTGGGACTGAGTACAGAGAATCAATGCTCAAGCCGCCGTTTTTACCGCCTTTGAACGGAATTAAGATGCTGCAGCCGGACGGCCCAAGCTTCAAAGTCAATGCTCACTCCATTAGTTGGGCCAACTGGAATTTACACATAAGCTTGGATGAGAGAGCAGGGCCAATCATATCACTAGCGTCAATCTACGACATGGAAAAGAAAAAACACCGACAAGTAATGTACAGAGGATTTATATCGGAGCTATTCGTGCCGTACATGGATTTAAACGAAGAATGGTACTACCGGACATTTTTCGACGCCGGCGAGTATGGCTTCGGCCAGTGCGCAGTACCGTTACAGCCGCTGAGAGACTGCCCAGAAAATGCGGTGTTTATGGACACGTACATGGCTGCCGGAGATGGCAGGCCGGTGAAGATGCCAAACACTATTTGTATATTTGAACGCCACGCCGGTGATATCATGTGGCGCCACACGGAGGGCACCATTCCCAATACACTTGTAAAGGCAAGAGCGGAAGTGAACTTAGTGGTAAGGATGGTGGGAGCTGTGCGCAATTATGATTACATTGTAGATTGGGAGTTTAAGCAGAGTGGCTCCATTATTGCTAATGTGGAGATTGCTACGCAGGTTGGGTTAACTGGTTTGCTAGAAGTTAGGGCATCAAAGTACACTCACAATGACCAAATAAAGGAGGAAGTCTACGGTCCATTGTTAGCCGAGAATACGATCGGCGTCCGCCATGATCACTTCATCATCTACCACCTCGATCTCGACATCGACGGTGGCGCCAACTCCTTCGTCAAATCCAACCTCCGCACAGTCCGATCGCCGGACCCCGATTCCCCCAGGCGAAGTTACTGGACGGTCGTCGCCGAGACGGCCAAAACAGAGGCCGATGCCAGGATCAAATTCGGCCTCCAAGAGGCCGAATTGGCGATCGTTAATCCCAATCGGAGGACCAGAATGGGGAATCCCGTCGGCTACCGTCTGATTCCGAAGTCGGCGGCGGGCCCCCTTTTGAGTGCTGATGATTACCCCCAAATTAGGGGAGCTTTCTCCAATTACAATGTGTGGGTTACACCGTATAATAGCTCCGAGAAATGGGCTTCTGGACTCTTCACTGATCAGAGCCGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGCTTAAGAAAAGGATTTATGCATGTGATTAGGTCAAGTGAATCATCTTCTAGCCAGTCTTTGGATGGTAGATTTATGATTTGTTTAATGTACAATATAAAAAGGGACAGGGAGATAGAGAACAAGGACATAGTCATGTGGTACACCATGGGGTTTCATCATGTACCTTGCCAAGAAGATTTCCCATTAATGCCAACTCTGAGCAGTGGCTTTGAGCTGAGACCAACCAATTTCTTTGAGAGCAATCCTGTGCTTAAAGTCACCCCACCCCAGGTAGTCAACTGGTTCAATTGCTCTGACTTGAAACCATAA 2067 49.54 MFTLEDLNHMKSLTHINVTLITNSNPSTNITFQYVALADPTKQSVLSWLSNPKTPPPPRRAIATVRFNKATHEILIDLHKKTVISNRVYSGPGFAPYTFEEQFAAAALPPSHPPFAAAMKKRGLKMEEVVCACFSVGWFGEKRKVEKRIVKVQCYYLDGSVNLYMRPVEGVTVTVDLDEMKIIEFRDRYVVPIPKAGGTEYRESMLKPPFLPPLNGIKMLQPDGPSFKVNAHSISWANWNLHISLDERAGPIISLASIYDMEKKKHRQVMYRGFISELFVPYMDLNEEWYYRTFFDAGEYGFGQCAVPLQPLRDCPENAVFMDTYMAAGDGRPVKMPNTICIFERHAGDIMWRHTEGTIPNTLVKARAEVNLVVRMVGAVRNYDYIVDWEFKQSGSIIANVEIATQVGLTGLLEVRASKYTHNDQIKEEVYGPLLAENTIGVRHDHFIIYHLDLDIDGGANSFVKSNLRTVRSPDPDSPRRSYWTVVAETAKTEADARIKFGLQEAELAIVNPNRRTRMGNPVGYRLIPKSAAGPLLSADDYPQIRGAFSNYNVWVTPYNSSEKWASGLFTDQSRGDDTLATWSLSLRKGFMHVIRSSESSSSQSLDGRFMICLMYNIKRDREIENKDIVMWYTMGFHHVPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVTPPQVVNWFNCSDLKP 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21084246 21092425 + Lsi09G013230.1 Lsi09g01323 670936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01323 688 Pfam Copper amine oxidase, N2 domain 26 88 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 Pfam Copper amine oxidase, enzyme domain 218 670 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 Pfam Copper amine oxidase, N3 domain 97 194 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 SUPERFAMILY Amine oxidase catalytic domain 212 678 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 Gene3D Copper amine oxidase, catalytic domain 227 682 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 Gene3D - 13 95 - -
Lsi09g01323 688 ProSitePatterns Copper amine oxidase copper-binding site signature. 634 647 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 PANTHER AMINE OXIDASE 618 684 - -
Lsi09g01323 688 PANTHER AMINE OXIDASE 17 588 - -
Lsi09g01323 688 SUPERFAMILY Amine oxidase N-terminal region 94 202 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 SUPERFAMILY Amine oxidase N-terminal region 18 91 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 Gene3D - 97 192 - -
Lsi09g01323 688 PANTHER COPPER AMINE OXIDASE 618 684 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01323 688 PANTHER COPPER AMINE OXIDASE 17 588 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01323 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101210998 1146.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00380 Lsi-Chr9:3999854 Lsi09g01323 Lsi-Chr9:21084246 1.34E-176 dispersed
Lsi09g01323 Lsi-Chr9:21084246 Lsi09g01325 Lsi-Chr9:21104611 0 dispersed
Lsi09g01323 Lsi-Chr9:21084246 Lsi09g01324 Lsi-Chr9:21093135 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97