Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01324 ATGACTCTTCTTCTGTTTCTTCTTGTAGTCCTTCACCTTCATTTCTGTACGGCGGAGCCGCCCTTTTTCCATCCGCTTGATCCTCTAAACCCGGCGGAGCTTGACCAAATTAGGCTCGCTGTACATAAATCCCACCTTGGGAAGCTTCCAAATCTCACATTTCACTTCGTTGACTTGGAAGAACCAGAGAAGAAGGATGTTCTTTCCTGGCTTTCTTCCGGTGAACAAAACAGCCCCCTCCACCGCCCACCCCGCCACGCCAAGGTTGTGGTTCGGGCGGCGGATTCTACCCACGAGCTACTTGTAGACCTTGCCACACGCTCGGTTAAGTCTGACCAAGTCTATAATGGCCATGGCTATCCTCCTCTCACTTTTGTGGAGCTTTTCCAAGCCAGCAAATTGCCACTCAATTTCCCCAAATTCAAGTCTTCTATTCAGAGGAGAGGCTTGAACTTGTCTCATGTTTCTTGCATCCCGTTTACAGTAGGCTGGTACGGCGAGAAAACGACCAAAAGGCTTCTAAAAGTTGCGTGCTTTTACAGAGAAGGAACCGGCAATGTCTTCTCCAGGCCAATCGAAGGCATCATCACACTAATCGATGTTGATTCGATGAAAATCATCAACTACTCCGACAGATTCACCGCCCCTTTGCCGGAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCCCAAATCTTCCAACTGCAAGGCGGCGAAAAGAAGATTCACCATCGAAGGCCATCAAGTGAAATGGGAAAACTGGGTCTTCCATGTGGGGTTCAACGCCAGAGCCGGAATTATTATCTCAACAGCCTCCATTTTCGACGATGAGAAGAAGAAATTCAGACGAGTGCTTTACAGAGGACACATTTCAGAGACGTTTGTGCCGTATATGGATCCGACGAACGAATGGTACTTCAGAACCTTTATGGACATCGGAGAGTTTGGATTTGGGCGGGCGGCGGACACTCTGCAGCCGCTAGTTGACTGCCCGGAAACCGCCGAGTATCTAGACGGCTACATGGCCGGCGCCGACGGGCGAGCGCAGAAAGTATCGAGAGCCATTTGCATCTTTGAACGCCATTCAGGAGACGTTTTATGGAGACATACTGAGATTAATATTCCTGGAAAAGTGATTAGACGTGGGGAACCTGAGATTAGTTTGGTTGTTAGGATGGTGGCAACTGTTGGGAATTATGATTATGTTCTTGACTGGGAATTCAAAAGAAGTGGCTCTATTAAAATGGGGGTTGCTTTAACAGGGCTTTTGGAGGTTAAAGCCACACCGTACAGAAATAACATGGATATAACCCAACAAACATACGGAACTTTAATCGCCGACAACACAGTCGCCGTTAACCACGACCACTATCTAACCTACTACCTCGACCTCGACATTGACGGCGCCCCCAACTCCTTCGTCAAAGCCAAGTTGATAACGGCAACGACGGCGGACGTCAACGCCACGTCACCTAGGAAAAGTTACTGGAAAATTATCCGAGAAACCATCCAAACCGAAACTGAAGCTAAGCTTCAGCTCGGCTCCGACCCAGCTGAGCTCTTGTTCGTCAACCCCAATAAGAAGACAAAGATTGGGAATCCGGTTGGTTACCGGCTCATCACAGGCCAACCGGTTAATTCTTTACTGACCGACGATGATTACCCTCAGATCAGAGCGGCTTACACCAAGTACCCGTTGTGGGTCACTCCATATAACAAGTCGGAGAGATGGCCGGCTGGGTTTTACGCTGATCGGAGCCGTGGTGATGATGGCTTAGCCGTCTGGGCCAAAAGGAACAGGAGAATTGATAATAGAGATATTGTTTTATGGTACACGGTGGGTTTCCATCACAGCCCTTGCCAGGAAGAATTTCCGGCAATGGCCGCCCTCCACGGCGGCTTCGAGCTCCGACCAGCTAATTATTTTGATAGAAACCCTGTCCTTAAATGA 1956 48.82 MTLLLFLLVVLHLHFCTAEPPFFHPLDPLNPAELDQIRLAVHKSHLGKLPNLTFHFVDLEEPEKKDVLSWLSSGEQNSPLHRPPRHAKVVVRAADSTHELLVDLATRSVKSDQVYNGHGYPPLTFVELFQASKLPLNFPKFKSSIQRRGLNLSHVSCIPFTVGWYGEKTTKRLLKVACFYREGTGNVFSRPIEGIITLIDVDSMKIINYSDRFTAPLPESEGTDYQSKKTEPKSSNCKAAKRRFTIEGHQVKWENWVFHVGFNARAGIIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRAADTLQPLVDCPETAEYLDGYMAGADGRAQKVSRAICIFERHSGDVLWRHTEINIPGKVIRRGEPEISLVVRMVATVGNYDYVLDWEFKRSGSIKMGVALTGLLEVKATPYRNNMDITQQTYGTLIADNTVAVNHDHYLTYYLDLDIDGAPNSFVKAKLITATTADVNATSPRKSYWKIIRETIQTETEAKLQLGSDPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLTDDDYPQIRAAYTKYPLWVTPYNKSERWPAGFYADRSRGDDGLAVWAKRNRRIDNRDIVLWYTVGFHHSPCQEEFPAMAALHGGFELRPANYFDRNPVLK 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21093135 21097263 + Lsi09G013240.1 Lsi09g01324 670937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01324 651 Pfam Copper amine oxidase, N3 domain 121 214 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 PANTHER COPPER AMINE OXIDASE 4 651 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 Gene3D - 123 215 - -
Lsi09g01324 651 ProSitePatterns Copper amine oxidase topaquinone signature. 390 403 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 PANTHER PRIMARY AMINE OXIDASE 1 4 651 - -
Lsi09g01324 651 SUPERFAMILY Amine oxidase N-terminal region 21 120 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 SUPERFAMILY Amine oxidase N-terminal region 119 225 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 Gene3D Copper amine oxidase, catalytic domain 244 651 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 Pfam Copper amine oxidase, N2 domain 24 114 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 Pfam Copper amine oxidase, enzyme domain 242 650 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01324 651 Gene3D - 23 121 - -
Lsi09g01324 651 SUPERFAMILY Amine oxidase catalytic domain 241 650 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01324 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222232 1240.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01324 Lsi-Chr9:21093135 Lsi09g01326 Lsi-Chr9:21121169 0 dispersed
Lsi09g01323 Lsi-Chr9:21084246 Lsi09g01324 Lsi-Chr9:21093135 0 tandem
Lsi09g01324 Lsi-Chr9:21093135 Lsi09g01325 Lsi-Chr9:21104611 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97