Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01325 ATGGCCATTTCAGTTCGAGTAATATTTCTTCTCTTTTTTTGCTCTTTCATCCCTTCCATAGTTTCTTATCACCCTTTAGACCCTCTTTCACCAACTGAAATACAGACAGTTGCAGCCATTATCAAAGCTTCCGAGCTCGGCCATTCGTCGAGGCTCACGTTCCACTACGTCAACTTAGACGAGCCGAGCAAACCCGCCGTTCTTGCATGGCTATCAAACCCTTACAAACATCAACCACTGCCCCGTAGGGCCTTCGCCATAGTCAGAGCCAACGGGCAAACTCATGAACTCGTCGTTGACTTACACACCAATCTTACCATCTCCCACAAAATCTACACGGGCACGGGTTATCCAGTGCTGAATTTAGAGGAGCAAGAAACGGCGATCGAGGTTGCCATTAAACACCCGGCAGCGGTCGCGTCGATCAAGAAGAGGGGGCTAAACATTTCAGAGGTGGTGGCTTCAACTTTCACCATAGGATGGTTTGGGGAAGAGAAGACAAAGAGAGTGATTAAGGTATTGTATTTTTACAAAGAAGGGTCTCCAAATATTTGGGTGAGGCCCATTGAAGGGATTGAAGCTCTGGTGGATCTTGATATATTGAAGGTTGTTGAGTATAGAGATCGCCATGTTTTTCCTGTTCCAAAAGCTCAGGCCACCGATTACAGAGCCTCCGTGTTTAAGCCGCCGTTTGCGGCGGAGACAAAGTCCATCACTCTTTACCAACCGGATGGTCCTACCTTCAATGTTACTGGCCATGAAATAAGGTGGGCAAACTGGGAATTTCACATGGGCTTCGACGTTCGAGCGGGGATTATAATATCATCGGCATCGATCGCCGACATCGAACAACGGCGACGACGGCAAGTGCTATACAAAGCCCAAATCTCAGAGCTCTTTGTCCCTTACCAAGACCCAACCGAGGAATGGTTTTACCGGACATTTTTGGACGCCGGCGAGTTTGGGTTGGGCCTTTCCGCCGTCGAGCTCGAACCCTTCACCGACTGCCCAGCAAACGCCGTGTTCTTCGACGGTTTCTACGCCGGCCAAGATGGACTTCCCGTCAAAATTCCCAACGCCGTTTGTGTCTTCGAGAAGTACGCCGGCGGCGTTGCTTGGCGTCACACTGAGCTCGAAATTCCCGGCGAAGACATTAGAGAAGTGCGACGAGATGTGAGCTTGGTGATAAGGATGGTTTCTATGGTGGGAAACTATGATTATATTTTTGATTGGGAGCTCAAGACTAGTGGTTCTATCAAATTTAAGGTGGGTTTAACAGGCATTCTAGAAGGGAAGTCCACAATATACACTCACACAAAAGAAATCAAAGAAGACATATTTGGCACTCTAGTAGCACCAAATACAGTGGCTGTGAACCATGACCATTTCCTCACTTACTATTTGGATCTCGACATCGACGGTCAACAAAATTCTTTCATCAAAGCCAACTTAAAAAAGAAGAAAATTGACAGCGATACGCCAAGGAAGAGCTACTGGACCGTCTTGAAGGAGACAGCCAAAACGGAATTCGACGCTAGACTCCGGCTGATGGAGCCAGCTGAGTATTTGATTGTCAATCCAAATAAAGAGACTGAAGTTGGTAACCAAGTTGGGTACCGATTGATTCCTGGGCCTGATACTCCGCCACTGTTGGCAACGGATGATTGCCCACAGATTCGAGGAGCCTTGTCTGAGTATAATATTTGGGTTACTCCTTATAATAGATCTGAGATTTGGGCTGCTGGACTTTATTCTGATCGAAGCCGAGGTGATGACACTCTAAAAGTTTGGACTGATAGGAATAGGGATATCTACAACAAGGACATAGTTTTATGGCACACCATTGGGTTTCACCATAACCCTGTTCAAGAGGAATTTCCAATAATGCCCACACTTACCGGTGGCTTCGAACTCCGACCGGCAAATTTCTTCGACCGGAATCCCATTTTGCGCATGAGGGCTCCGGAGGTTGTCAAGGTTCCGCCGCCGTGCAACGCCACCGTTCCCTGA 2010 47.71 MAISVRVIFLLFFCSFIPSIVSYHPLDPLSPTEIQTVAAIIKASELGHSSRLTFHYVNLDEPSKPAVLAWLSNPYKHQPLPRRAFAIVRANGQTHELVVDLHTNLTISHKIYTGTGYPVLNLEEQETAIEVAIKHPAAVASIKKRGLNISEVVASTFTIGWFGEEKTKRVIKVLYFYKEGSPNIWVRPIEGIEALVDLDILKVVEYRDRHVFPVPKAQATDYRASVFKPPFAAETKSITLYQPDGPTFNVTGHEIRWANWEFHMGFDVRAGIIISSASIADIEQRRRRQVLYKAQISELFVPYQDPTEEWFYRTFLDAGEFGLGLSAVELEPFTDCPANAVFFDGFYAGQDGLPVKIPNAVCVFEKYAGGVAWRHTELEIPGEDIREVRRDVSLVIRMVSMVGNYDYIFDWELKTSGSIKFKVGLTGILEGKSTIYTHTKEIKEDIFGTLVAPNTVAVNHDHFLTYYLDLDIDGQQNSFIKANLKKKKIDSDTPRKSYWTVLKETAKTEFDARLRLMEPAEYLIVNPNKETEVGNQVGYRLIPGPDTPPLLATDDCPQIRGALSEYNIWVTPYNRSEIWAAGLYSDRSRGDDTLKVWTDRNRDIYNKDIVLWHTIGFHHNPVQEEFPIMPTLTGGFELRPANFFDRNPILRMRAPEVVKVPPPCNATVP 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21104611 21112034 - Lsi09G013250.1 Lsi09g01325 670938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01325 669 Gene3D Copper amine oxidase, catalytic domain 248 661 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01325 669 Pfam Copper amine oxidase, enzyme domain 239 649 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01325 669 SUPERFAMILY Amine oxidase catalytic domain 227 654 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01325 669 SUPERFAMILY Amine oxidase N-terminal region 22 117 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01325 669 Gene3D - 119 213 - -
Lsi09g01325 669 Pfam Copper amine oxidase, N3 domain 120 214 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01325 669 PANTHER AMINE OXIDASE 7 657 - -
Lsi09g01325 669 Gene3D - 23 118 - -
Lsi09g01325 669 PANTHER COPPER AMINE OXIDASE 7 657 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01325 669 Pfam Copper amine oxidase, N2 domain 24 109 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01325 669 SUPERFAMILY Amine oxidase N-terminal region 116 223 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01325 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222468 877.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01586 Lsi-Chr6:26265780 Lsi09g01325 Lsi-Chr9:21104611 1.02E-76 dispersed
Lsi09g01323 Lsi-Chr9:21084246 Lsi09g01325 Lsi-Chr9:21104611 0 dispersed
Lsi09g01324 Lsi-Chr9:21093135 Lsi09g01325 Lsi-Chr9:21104611 0 tandem
Lsi09g01325 Lsi-Chr9:21104611 Lsi09g01326 Lsi-Chr9:21121169 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97