Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01326 AAATCCAAATTCAACAACCTCGCTCGACGCCTCACTTTTCACTACATTGGCATCCACGAGCCAAACAAATCCGTCGTCCTCTCATGGCTAGCGAATCCCCGTTCCTCACCTCCGCCACGTCAAGCCTTTGTCGTCGTACGGGCAAACAAGCAGACTCACGAGTTTGTCGTGAGGCTAGTCAATGGCAAAGGCTTGATTGTATCAGAGTATGTATACCAAGGCACGGGTTTCCCAACCCTAACCCTCGAAGAACAATCAGAAGCAATTGAGTTGTCCCTCAAACACCCACCTTTCATAAAGTCAATTGAAAAAAGAGGGTTGAATGTTTCAGATGTTGTGGGCTCGATTTTTACTATTGGGTGGTTTGGAGAGGCCCGAAGTGAAACGAAAAGGATTGTGAAGGAATCAACGGTCAATGTTTGGTTGAGGCCGATTGAGGGTGTTGAAACGATGGTGGATCTTGATGATATGGTGTTGACGGAATTTAAAGATCTTGAAATTTCTGTTATGCCTAAGAGTGAGGGAACGGAGTACCATGCTTCCACTTTGCGGCCGCCGTTCGTGCCGGAGACCAACCAGATTGATGTTCATCAACCGCTTGGTCCTAGCTTTGTGGTTAAAGGTTGGGCGAATTGGGATTTTCACCTAAGCTTTGACATGCGAGTGGGAGTCATAATATCAGCAGCGTCGATATACGACATCGACCAACAAAACAAACGACAAGTTCTATACCGAGGTCACATCTCGGAGCTGTTTGTACCATACCAAGACCCGACGATGGAGTGGTATTACTGGACGTTTATGGACGCTGGAGAATTCGGGATGGGGTTGTCAGCAGTGGCGCTCGAGCCCCTCCACGACTGTCCTCCTAACGCCGTGTTCTTCGACTCCTTCCACGGCAGCCAAGACGGAAAGCTGGTGAAGTTAAAGAATGCGTATTGTATGTTTGAGAAATATGCTGGAGATATTGCTTGGCGCCACACTGAGAGTGTAATTCCGGGAGAACTGATAAGAGAAGTGAGGCGGGACGTGAGCTTGGTGATAAGGACAATAACGGTGAGTTTAACGGGAATCATGGAAGGAAAAACGACACCGTACAAGCACCAAAGCGAGGTAAAGGAGGAAATGTATGGCCAATTAGTAGCCCCAAACACAATGGGCATAAACCACGACCATTTCATCACATATTATCTAGATCTTGACATCGACGGACAGGAAAATTCCTTTATCAAAACTAAATTGAAGAGTTTTAAAACCGACGGCTCGACGCCAAGGAAGAGCGATTGGTCGGCAGTTGAGGAAGAGATAGAGAAGGAGCTGGATGCCAGACTCCGACCGACCGAGCCGGTGGAGCTGCACATTGTGAATCCAAATAAGAAAACTGCAATAGGCAACAAAGTTGGGTATCGTTTAATTCCAAGACCAATGGTTGTTCTGCTCATTTCAGAAGATGATTATCCGCAAATTCGAGGAGCGCTTTGTGATTATGATATATGGGTTACACCTTATAATCGATCTGAGAAATGGGCTGGTGGTATGTACGTCGACCGTAGTCACGGTGACAAGACCCTTAGCATTTTAACACAACGGAATAGGGATATCAACAACAAGGATATTGTGTTATGGCACACAATAGGGTTCCACCATCATCCCAGTCAAGATGAATTTCCAATAATGCCCACCCTCACTGGAGGCTTCGAACTTCGACCTACAAATTTCTTTGAAAGAAATCCAATTCTCAAAATGAAGGCTCCATAA 1758 46.19 KSKFNNLARRLTFHYIGIHEPNKSVVLSWLANPRSSPPPRQAFVVVRANKQTHEFVVRLVNGKGLIVSEYVYQGTGFPTLTLEEQSEAIELSLKHPPFIKSIEKRGLNVSDVVGSIFTIGWFGEARSETKRIVKESTVNVWLRPIEGVETMVDLDDMVLTEFKDLEISVMPKSEGTEYHASTLRPPFVPETNQIDVHQPLGPSFVVKGWANWDFHLSFDMRVGVIISAASIYDIDQQNKRQVLYRGHISELFVPYQDPTMEWYYWTFMDAGEFGMGLSAVALEPLHDCPPNAVFFDSFHGSQDGKLVKLKNAYCMFEKYAGDIAWRHTESVIPGELIREVRRDVSLVIRTITVSLTGIMEGKTTPYKHQSEVKEEMYGQLVAPNTMGINHDHFITYYLDLDIDGQENSFIKTKLKSFKTDGSTPRKSDWSAVEEEIEKELDARLRPTEPVELHIVNPNKKTAIGNKVGYRLIPRPMVVLLISEDDYPQIRGALCDYDIWVTPYNRSEKWAGGMYVDRSHGDKTLSILTQRNRDINNKDIVLWHTIGFHHHPSQDEFPIMPTLTGGFELRPTNFFERNPILKMKAP 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21121169 21125001 - Lsi09G013260.1 Lsi09g01326 670939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01326 585 Pfam Copper amine oxidase, N2 domain 4 63 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01326 585 Gene3D - 1 78 - -
Lsi09g01326 585 Pfam Copper amine oxidase, enzyme domain 351 579 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01326 585 PANTHER AMINE OXIDASE 7 585 - -
Lsi09g01326 585 SUPERFAMILY Amine oxidase catalytic domain 183 582 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01326 585 SUPERFAMILY Amine oxidase N-terminal region 77 183 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01326 585 Gene3D - 79 169 - -
Lsi09g01326 585 PANTHER COPPER AMINE OXIDASE 7 585 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01326 585 Gene3D Copper amine oxidase, catalytic domain 206 585 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01326 585 SUPERFAMILY Amine oxidase N-terminal region 9 63 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lsi09g01326 585 Pfam Copper amine oxidase, N3 domain 78 165 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01326 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222468 1014.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00379 Lsi-Chr9:3990057 Lsi09g01326 Lsi-Chr9:21121169 6.36E-137 dispersed
Lsi09g01324 Lsi-Chr9:21093135 Lsi09g01326 Lsi-Chr9:21121169 0 dispersed
Lsi09g01325 Lsi-Chr9:21104611 Lsi09g01326 Lsi-Chr9:21121169 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g480 . Blo12g00326 . . . . Bma04g00788 . . Cmo17g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01716 Tan06g2527 . Lac12g2288 Hepe03g0191 . Lcy13g0276 . . . . . . . Lsi09g01326 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97