Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01331 ATGGATAGGAACAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCCTCCAACGGGCTCTCTAGACGGAGATACAGGAGTGGTAGTCTTCGTGACTCTCCAGAGGATGATGGACCACTGGAGTTACAGGATACCGTGAGATTGAGAGATCGAGGCAGCGGGAAGAAAGATCGAGATCGAGATAGGGATAGAGACAGAGATCGAGACCGTGATAGAGATCGGCTTAGCAGGAGCAAGAGGAGAAGAGCTGATAGATTGATTCATGGCGGTAGCAATAGGGAAGATGGAGGGGAAGATAGTTCTGAGGAGAGTGTAAACGACGAAGAGGATGAGGAAGACGATGATGGTGGTGCTGGTGCTGGTGCTGGTGGTGGAGCATCCGTCAGAATGCTTCCGCCGAATCCGGCTGCGATTTTGAACCATCGGAAGAGTTATCCACCGGCGAAGAGTTTTAGAGCAGCACCGTCGTGGAAAGCCGCCGATGAAATGATTGGTGTGTCGGTGCCGAGAAAAGCCCGGTCAGCCTCGACGAAGCGGTCTCATGAATGTTGGCCAGCAGCGGCGGGCAGCGGAACGGTCACTGAAGCCATTCACCGGCAGGCTTCAACATCGCCAGTGAGGCCAAGTCTTACACCAATGGTGACGCTTCAGCCTCCAGCCTCGCCTTCTTCTTCCAATGCTTCGGTGAGGAAGAAGCTGAAGCAAACCGGACCTAAACTCCGGCCGCTCAAATCCTCCTCAAAACCATCATCCATGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTCTTGTACGGTATGATGAGACAACCTCAAGCTCCTCCCAAACAAGAACCTTCTACTACTGATTCGATGAAGTTCGATCCGAAATCAACCACCGATGCCAAATCCAGAGTTTCATCGCCGATTTCTAACTCTTCTTCTGCTTTGCCTACACCTTCCTCTTTGCCTCAAAATTCCATTTCTGTCACTCCGATATCAGCCACCGCACCCAAGAGGAAAAGACCGCGTCCAGTGAAGTACGACGATGAAAACGCCGCGACTTTCAGCCTCCGGAATAGCCCCATTTCGTCAGCAGCCAAAGCGGAGGCCGATCAACCCACCAACGCCGAGATCCCTTCATCAAATGTGGAAAAAGTTGCAGGATCTGCAGTTGAAAATGGCGTAGTTTCAAACGAATCTGGTAATTCTCAGGCCTTACCACCAACATCAGAGTCCCATCCAGAATCTATGAAGGTGGAAACAGCCAGTGCCTTGTCCAATTCTAAGCCATTGACTGAAGAATCAGAAGGTAAAGATTTGGGTACAAGCAAGGAAGAACCCCAATCTCCCCTGAAGGAATCAAATGGCCCTAGATTGGAAGATAAGCGAGAGGATATGACAGCGACTAAATCAAATTCATCAACCTTCGATGTTGAGAACCAGCGGGATGATAAGTACAAGATAGATCTGATGGCTCCTCCACCATTACGAGCTTCTCCAGAAAGAGATGGTGAGATTGATTTTGTGGCCGTAGATGCTAAACCTATGGTCATAGATGCAGACACGGAAATGAAGCCTCTGATAAAGGAAGAAGACAAAGGAACAATCAGACTTGGGGCTAAAGAGGCGGTGAATGTGGAGTCCAAAGTTATACCACCTGAAGAAGCTGATTCAAAGAAACCCATTGTCTGCAAAGATAGAAATATTGACCTTCAGCTTGATTTAGAGAAGACGACTGATAGAGATGGTGTCACTGCAAATGTAGGCACCAACAAGCTCCACCAGCATGTTCCAAAACAGCCGTTGCAATCCGGCTCGGAAAAGCCTGGATCTGCCGGTAGGTTCCTATTTCAAATCCCAGTCACCCCCTTCCTGCCTTTCCCTTTCTGGTTTTGGTCCAAATGGGTTGCTGATTCAATGTTGTTTTTTCATTTATCTTGTTCAGTACAAGCCAGCTCTCTTCCTTTGCCCATGTCTCTACCTGGCTGGCCAAGTGGGCTGCCTACGATGGGGTACGGTCGCCACAATCTGTTATATGTGGCACCGCTACCAGGAGTTGTGTCTGTTGATGGAAGCGCTTTGCCTACTGCTGCTATGCAGGTACCGCCAAATTTGCTTTTTCCTCAACCCCGGCCGAAGAGGTGTGCTACACATTTTTATGTTGCTCGGAATATATTGTATCACCAGCAAATTGCACGGATGAATCCGTTTTGGCCAGCAGCAGCAGGTTCTGCTTCCTTGTTTGGGCCCAAGCATGGTACACACAGCATCGTGCCCTCTCCAGATTTGCAAGGAAATCTTCCAAAAAGCGGGATAAATGCAATGCAGGATAAGGGCCAGGGCCTTGGAATATTCTCGGGTCATTCTGGAAAGGATAGGGGCTCTCAAGCTGTTAACGCTGTGGATGCCTCTCAGAGGAAGCAAATTTTGCTTCAGCAAGCTCTGCCCCCGGGAGCACCTAGTAATATCCTGCATGGCCCTACTTTCCTTCTCCCACTGAGTCAGCAACAGGCAGCTGTAGCCACTTCTGTTCGGCCTGTTTCTGTGAAGTCTCCTTCTCCTAGTGGGAATGCCAACGGCAGTGTGGCTTCAAATGCTTCGAATCCTGCCTCTGTTAGTTCCTCAGCCGCTGCAGCAATTGCTGCACCAGCAATGAGTTTCAACTATTCGGGTGTGCCTGGCAATGAACCACAGTATTTAGCCATTTTGCAGAACAATGGATATACGTACCCAATTCCAGCACACGTTGGGGCACCGCCTGCATATAGAGGAACCCACGCTCATTCAATGCCTTTTTTCAATGGGTCGTTTTATTCTTCACAAATGCTTCATCCTTCACAGCTTCAGCAGCAACCGCCACCTCAGTCTCATCCTAATCAACAGGGACTTCAAAATGCTAATACTGCGAATGGTTCCTCGTCGTCTCAGAAGAACCTATCTAATCAGCAGCAGCAGAGGCCACATGGGAGCAGTGTCAGTGGGAACTTTCAAGGCTTTCCTGCATCCAGAAATCAGCCTTCTCAATCACAGCAGCCACAGCAGCAGCAGAACCATGGTTCTCATCAAACAAGGCAACTTGAGTCTGAGATTGGTGGTGAAGATAGCCCGTCGACTGCTGATAGTCGAGGAAATCTTGGTAATCTGAGTGTCTATGGTCCGAATTTTCCGATGCCAATGCACACTCCCAATTTTGCTTTGATGACTCCTGCATCCATGGCGGCTGCTGGTGGGGCACCTAATGACAAGAAACAGCAGCCCCAACAACAGTCACAGGGTTCAAAGAGTCTGGAACAATCTCAAACTATTCCTTTGTCTTTTGCTCCTCCCAACGGGGCGCCCTCTGCTCCTGGACTTGACCTTTCATCCATATCACCGAATCATCCTATTTTTCAAAGTCTTCCTGAGATCACCAGGCAGGGGTATCATCAGATTATGGCTGCTGCTGCTGCCGCACAGGTTGCTCAGCAGAAAAAGAATTATCGTGTAACCGAGGAAGGAAAAACCACACATTCATCTGTTGGGGAAGATGAGAGAAAAAACATGTCTGTGAAAGCTCCTCCAACTGTTGGTCAGTCCATTGCCTTCTCTAGATCTGATTTAGCCGAGACATCACTTTCTACAATACCAGCTGGGGCCGCTGTTGTTGACAGCTCTGCAAGAACTCTTAACCTTGGTTCTACTGCTAGAGCTTCAGGTTCCGGAATGCCCTCTGGGATGGGCACTGTAAACATGTGTGGTTCTCAGCATCCACTGCAGCGAAATCAGCAGCAGCAACAGCAACAGCAGATAATTCAGCTCCAAAAGCAACAGCAATATGCAGCTGCAGCTGCAGCAGCAAGGACCAAAACATCAACAAGTAATGGCAATGTTTATGCTGAGCACCCTCCTGCGTCTTCAATGGCAGCAAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCAAAGTAACAGCAATAGTCCTGCTCAATCTCCTCAGTGGAAAAATTCTGTAAGAACCACCTCTTCTCAGGTTCAAACCCCCCCTCTGTCTTCATCAAATACATCATCTATCAAAAATCATCCCCAACAGCAGGGCCGTCCACAGCCAAACCACTCTCAGATTTCTTTTGCAGCTAACTCAAAATCTACAACACAATTGCAAGGACAGCAACCTGCAAGCAGTAATCAATCACCATCACCTGGAATGATTGGTTCACCAACTAATTCTTCGATCTCAAAAGGTGCTGGTGGAAGCCCGCGGACTGCTACCTCCGGTTCTATGGGCCACAAAGTTGGTCAATCATCTTCTTTATCCTCGCAGCAGACAAAGAATCCTACATCTATGCCCCCCCAGAAGTCATCTCCTGTTGGTGGGAGGAATGTTACGTCAATTCTTGGCAATAATCAAATGACCTCTTCAAGTTCTGGAAATAAATTATCCCAACAGTCGCAGCAGCAGCAGCAACAGCAACATTTGGCGAAGCAAACATTGCAGCAAGCACAGTTACTCTTCCCTTACATGCAACAAGTTTCCCATTCAAGTAGCAGTGCAACTGTTTCACCTCCAAGTGGTTATTATCTTCCGAGACGTCGTCCTGAGCAGCAATCACAATCGCAGGGCTCGGGAGGAACATCCTCCAATGGAATGCTATCCCTGTGCCACCCTGTTACACTAGGAGGCAGCAGTACTACGGATCCTGCAAAGGCTGTTGCTGCTGCTGCTGCCGCGGCTAACAATATGAAAGGTGGTGGCTTACCCACACAAGCCATTCTCCATCCTGCTCAGTTTACTGCTGCACAGTCCTCCGGTAATCCTCATCAACTTGTACCTGCAGGTTTTCCTTACGTGCATACTGCTGCAGTGCAAGTGAAATCGACAGAGCAAAAACAACCTGCGGGTGGGTAG 4878 48.79 MDRNREARRTTTNMAASNGLSRRRYRSGSLRDSPEDDGPLELQDTVRLRDRGSGKKDRDRDRDRDRDRDRDRDRLSRSKRRRADRLIHGGSNREDGGEDSSEESVNDEEDEEDDDGGAGAGAGGGASVRMLPPNPAAILNHRKSYPPAKSFRAAPSWKAADEMIGVSVPRKARSASTKRSHECWPAAAGSGTVTEAIHRQASTSPVRPSLTPMVTLQPPASPSSSNASVRKKLKQTGPKLRPLKSSSKPSSMAQDEIEIEIAEVLYGMMRQPQAPPKQEPSTTDSMKFDPKSTTDAKSRVSSPISNSSSALPTPSSLPQNSISVTPISATAPKRKRPRPVKYDDENAATFSLRNSPISSAAKAEADQPTNAEIPSSNVEKVAGSAVENGVVSNESGNSQALPPTSESHPESMKVETASALSNSKPLTEESEGKDLGTSKEEPQSPLKESNGPRLEDKREDMTATKSNSSTFDVENQRDDKYKIDLMAPPPLRASPERDGEIDFVAVDAKPMVIDADTEMKPLIKEEDKGTIRLGAKEAVNVESKVIPPEEADSKKPIVCKDRNIDLQLDLEKTTDRDGVTANVGTNKLHQHVPKQPLQSGSEKPGSAGRFLFQIPVTPFLPFPFWFWSKWVADSMLFFHLSCSVQASSLPLPMSLPGWPSGLPTMGYGRHNLLYVAPLPGVVSVDGSALPTAAMQVPPNLLFPQPRPKRCATHFYVARNILYHQQIARMNPFWPAAAGSASLFGPKHGTHSIVPSPDLQGNLPKSGINAMQDKGQGLGIFSGHSGKDRGSQAVNAVDASQRKQILLQQALPPGAPSNILHGPTFLLPLSQQQAAVATSVRPVSVKSPSPSGNANGSVASNASNPASVSSSAAAAIAAPAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPAYRGTHAHSMPFFNGSFYSSQMLHPSQLQQQPPPQSHPNQQGLQNANTANGSSSSQKNLSNQQQQRPHGSSVSGNFQGFPASRNQPSQSQQPQQQQNHGSHQTRQLESEIGGEDSPSTADSRGNLGNLSVYGPNFPMPMHTPNFALMTPASMAAAGGAPNDKKQQPQQQSQGSKSLEQSQTIPLSFAPPNGAPSAPGLDLSSISPNHPIFQSLPEITRQGYHQIMAAAAAAQVAQQKKNYRVTEEGKTTHSSVGEDERKNMSVKAPPTVGQSIAFSRSDLAETSLSTIPAGAAVVDSSARTLNLGSTARASGSGMPSGMGTVNMCGSQHPLQRNQQQQQQQQIIQLQKQQQYAAAAAAARTKTSTSNGNVYAEHPPASSMAAKFPNALSSFSQNLVQSNSNSPAQSPQWKNSVRTTSSQVQTPPLSSSNTSSIKNHPQQQGRPQPNHSQISFAANSKSTTQLQGQQPASSNQSPSPGMIGSPTNSSISKGAGGSPRTATSGSMGHKVGQSSSLSSQQTKNPTSMPPQKSSPVGGRNVTSILGNNQMTSSSSGNKLSQQSQQQQQQQHLAKQTLQQAQLLFPYMQQVSHSSSSATVSPPSGYYLPRRRPEQQSQSQGSGGTSSNGMLSLCHPVTLGGSSTTDPAKAVAAAAAAANNMKGGGLPTQAILHPAQFTAAQSSGNPHQLVPAGFPYVHTAAVQVKSTEQKQPAGG 1625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21206212 21214111 - Lsi09G013310.1 Lsi09g01331 670944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 938 1041 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 195 232 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 839 864 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 172 481 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 427 441 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1068 1118 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 585 602 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 25 99 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1 156 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 585 604 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1156 1177 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 100 117 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 388 426 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1310 1484 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 348 377 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 275 328 - -
Lsi09g01331 1625 PANTHER PROTEIN TIME FOR COFFEE 1 1624 IPR039317 GO:0042752
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1504 1554 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1156 1180 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1222 1257 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1521 1554 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 10 24 - -
Lsi09g01331 1625 PANTHER PROTEIN TIME FOR COFFEE 1 1624 - -
Lsi09g01331 1625 MobiDBLite consensus disorder prediction 1076 1102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01331 - - - csv:101215514 2404.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02291 Lsi-Chr2:29462995 Lsi09g01331 Lsi-Chr9:21206212 2.30E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45