Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01334 ATGCTGTCGAATCAGCTACAAAATGGGATGGACAGAGCAAAAAACATGTGGTCTCGTCTTCCGAACACCGACGAAAATGAGGATGACCTTCTAAGTTTCTTGAAGAAGAACGATGGGGGTGGCGTCGAAAGCCTTGATTATGAGGTCATCGAGAATTATGCTTACTGGGATGAGCAGGCGCAAAGAGGGAAATTATTTGTTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCTTTGTTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAAAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCAATCAACTTGGGTCTAGTATTTTCATCTGTATATATAGTCACACACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGCTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAAGGGCCTCTTGTGCATACAGGCGCCTGTATTGCTTCTTTGTTAGGACAAGGTGGATCTTCTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGATCGGGATCGTCGTGATCTTCAGGAGTTGCCGCAGCTTTTAGAGCTCCAGTGGGCGGTGTATTATTTGCACTGGAAGAAGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCTGTTGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGGGGAGTTGTTGCCCATGACTGTGATTGGGATTATTGGAGGTTTATTAGGAGCATTATTCAACCAGCTTACCCTTTACATGACTTATTGGCGACGAAACCATTTGCACAAGAAGGGGAACCGAGTCAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATTTCCTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGAACTGGGAAATGAGTGCCCAAGGCCTCCAGGAACTAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCACGGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACATTTGGTACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTTGTGGTTAGTTTCTACAAGAAGCCCAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCTTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAGGGGCATTCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAGGGAGGCCTGTGGAAAAAGGGTGATCTTGCTTATTCCTGAAACTCCTTTCGTAGTTGTCTCCTTCCCCCGTGTTGTTAAGGTTGCTGACGTTGTTAGTATTCTACGGAGCAACAGACATAATGGTTTTCCTGTGATTGATTACTCTCGAAATGGAGAAACGCGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTGCAGTCCAAAGTAGATTTTCAGCACAGTCCCCTGCCATCTGATCCAAGAGGATCCATATCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATCGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATCGATCTACTTCCATATCTGAACCCATCTCCATATATTGTCCCCGAGGATATGTCTCTGACAAAGGTATATAATCTTTTCCGGCAACTAGGTCTGAGGCATGCATTTGTTGTTCCCCGTCCATCAAATGTGGTTGGCTTGATTACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGGTCTCTGACTGTCTATGATGCTTTACTTGTCTACCAAAATAGATATTTACAACAGGAATGTTATGCTCATTGA 2346 42.54 MLSNQLQNGMDRAKNMWSRLPNTDENEDDLLSFLKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSSKYHLNSRWLQVFKSDRDRRDLQELPQLLELQWAVYYLHWKKWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGIIGGLLGALFNQLTLYMTYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAREACGKRVILLIPETPFVVVSFPRVVKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSISSRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRSLTVYDALLVYQNRYLQQECYAH 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21265832 21276580 - Lsi09G013340.1 Lsi09g01334 670947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01334 781 ProSiteProfiles CBS domain profile. 576 640 IPR000644 -
Lsi09g01334 781 SUPERFAMILY Clc chloride channel 52 554 IPR014743 -
Lsi09g01334 781 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 765 - -
Lsi09g01334 781 CDD ClC_6_like 43 552 - -
Lsi09g01334 781 Gene3D - 584 747 IPR046342 -
Lsi09g01334 781 Pfam CBS domain 694 740 IPR000644 -
Lsi09g01334 781 CDD CBS_pair_voltage-gated_CLC_euk_bac 584 740 - -
Lsi09g01334 781 SMART cbs_1 583 635 IPR000644 -
Lsi09g01334 781 SMART cbs_1 696 744 IPR000644 -
Lsi09g01334 781 SUPERFAMILY CBS-domain pair 584 740 IPR046342 -
Lsi09g01334 781 PRINTS Chloride channel signature 483 499 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi09g01334 781 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi09g01334 781 PRINTS Chloride channel signature 539 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi09g01334 781 PRINTS Chloride channel signature 501 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi09g01334 781 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi09g01334 781 PRINTS Chloride channel signature 448 468 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi09g01334 781 Gene3D Clc chloride channel 247 553 - -
Lsi09g01334 781 Gene3D Clc chloride channel 69 233 - -
Lsi09g01334 781 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 765 - -
Lsi09g01334 781 ProSiteProfiles CBS domain profile. 693 749 IPR000644 -
Lsi09g01334 781 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi09g01334 781 PRINTS Plant CLC chloride channel signature 280 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi09g01334 781 PRINTS Plant CLC chloride channel signature 400 416 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi09g01334 781 PRINTS Plant CLC chloride channel signature 262 272 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi09g01334 781 Pfam Voltage gated chloride channel 130 231 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi09g01334 781 Pfam Voltage gated chloride channel 250 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00719 Lsi-Chr5:9778960 Lsi09g01334 Lsi-Chr9:21265832 0 dispersed
Lsi09g01334 Lsi-Chr9:21265832 Lsi11g00348 Lsi-Chr11:3654966 3.40E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01334 K05016 - csv:101215989 1354.73