Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01336 ATGGGGAAACGGACGGCGAAAAGTTCGAGATCCCAAACGCTACCGTCATCACCGTCGCACTCGTTCTCTTCTTCTTCATCCTCCGATTTCGAATTCACGGTCTCTGTTTCGCCCCGTCAAGCTTCTACCGCGCTCTGTCCTGCCGATGAACTCTTCTACAAAGGTCAGTTGCTTCCTCTCCATCTCTCCCCTCGTCTCTCCATGGTCAGAACGCTGATTCTCGCCTCCTCCAGTACGTCGTCTTCTTCCGACACTAACAGCACCACCGCGTCGCGCGATTCCACCGGAAGTTCCACCGAGTCTCACTCCTCCTTCAGCAGCGATATCGTGCTTCTCGCTGATTGTGATTCCTCTAGACCTAGCTCCGTCACTGAGGACGAAGAGTTCAGAGCACGATTCGGTATCAATACGATCAAAAATCACAACAACAATAACTCAACTCCGATTAAGAAGAGCAAATACTTCTCGCTATCGAGATTTTCATCGGTGTTCAGAAAAGAATCGACAAAGAATAATCCAGAATCTGAAACTGTATCTGGATCGCACGTTAAGAAAATCAGCTCCTCGGCAAAGGAAGTTTTCAGGAAGTATTTAAACAAAGTTAAGCCGTTATATGGAAAAATTTCACAGAAACAACAACAGCAACAGGAATGGAAGACAAAAACGGATAGATCTGGTAAAGAGGATAAATCATCAGACATGGAGTTTACAAGCAATAACTCAGGAAAAGAAAACGGATCGAGAACGCTATCGCACTCATTTTCCGGTAATTTGAGATATCCGAGAAAAAGAAATATTGCGTCGAGTTGTCCATCGTCGATTAGGTCATCGCCTAGTCATTCCGGCATTCTATCGTCTCGGAATGGATTATCAAGCATGTATCCAACTAATAGAATCGGAACGACGACAAACTACAGCAGCAACACGTCGTCAATGGAGGAATTGCAGAGTGCGATTCAAGGTGCAATCGCTCACTGCAAAAACTCCATGGTGGAAAGCAAGAGGAGGACAACGACGACGATGAGTAACGAGATTTGA 1038 45.86 MGKRTAKSSRSQTLPSSPSHSFSSSSSSDFEFTVSVSPRQASTALCPADELFYKGQLLPLHLSPRLSMVRTLILASSSTSSSSDTNSTTASRDSTGSSTESHSSFSSDIVLLADCDSSRPSSVTEDEEFRARFGINTIKNHNNNNSTPIKKSKYFSLSRFSSVFRKESTKNNPESETVSGSHVKKISSSAKEVFRKYLNKVKPLYGKISQKQQQQQEWKTKTDRSGKEDKSSDMEFTSNNSGKENGSRTLSHSFSGNLRYPRKRNIASSCPSSIRSSPSHSGILSSRNGLSSMYPTNRIGTTTNYSSNTSSMEELQSAIQGAIAHCKNSMVESKRRTTTTMSNEI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21295561 21296598 + Lsi09G013360.1 Lsi09g01336 670949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01336 345 MobiDBLite consensus disorder prediction 207 308 - -
Lsi09g01336 345 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 4-RELATED 1 334 IPR039620 GO:0005886|GO:0019210
Lsi09g01336 345 MobiDBLite consensus disorder prediction 217 234 - -
Lsi09g01336 345 MobiDBLite consensus disorder prediction 266 308 - -
Lsi09g01336 345 MobiDBLite consensus disorder prediction 235 258 - -
Lsi09g01336 345 MobiDBLite consensus disorder prediction 77 103 - -
Lsi09g01336 345 MobiDBLite consensus disorder prediction 166 185 - -
Lsi09g01336 345 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 1-RELATED 1 334 - -
Lsi09g01336 345 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01336 - - - bhj:120068544 498.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01388 Lsi-Chr1:12022173 Lsi09g01336 Lsi-Chr9:21295561 1.98E-08 dispersed
Lsi03g02078 Lsi-Chr3:32061455 Lsi09g01336 Lsi-Chr9:21295561 2.63E-10 dispersed
Lsi04g00842 Lsi-Chr4:8142470 Lsi09g01336 Lsi-Chr9:21295561 1.55E-07 dispersed
Lsi08g01458 Lsi-Chr8:22733274 Lsi09g01336 Lsi-Chr9:21295561 5.53E-07 dispersed
Lsi09g01336 Lsi-Chr9:21295561 Lsi04g01573 Lsi-Chr4:23316438 3.84E-08 dispersed
Lsi05g01436 Lsi-Chr5:22260095 Lsi09g01336 Lsi-Chr9:21295561 5.72E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g466 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00565 Cam06g0605 Cec06g0605 Cco06g0610 Clacu06g0591 Cmu06g0586 Cre06g1352 . Cone15ag0822 . Cone4ag0228 . . . . . . . Bda13g00133 . . . . . . . . . . . Cpe12g00208 . Bhi12g01826 . . Lac12g1767 . . . . . . . . . . Lsi09g01336 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002276 3 2 2 1 3 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 1 62