Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01338 ATGAATATGGCTCATCTCGACACCGACCTCACTTCCCTCGACCATCTTCATTCCACCAGGTCCCTCATCTCTGCTCTCAATTTACTCTCCCGGAATCTTCCTCTTCCTCCCGACCTCTTTGAAGCTGTTTCTTCCATTTATTCAGCTCCTCACCACCAGGATCCCACTCCTCTCAATCATTCGGAGGAGGAGGTTGGAGAATCTGTTCAAGAAGATCTATTGACTGACCTTGGAGATGCTTTGGCGAAGCAACGTTCGAATTTTGTATCTGGTTCTGGGCTGGAACAGTCAAGAGAAGAGCGGTATCGAGGTCGTGTACGACGGCGGTTGGATGATTTAGAAGAATTACCTTCAAGTAGAGGGGAAGACTTACAGACAAAGTGCTTGCTTGAACTGTGTGGATTAAAGTTACTAGATTTGCAAAAAAAGGTACGATCTGATGTGAGTTCAGAGTACTGGCTTCAAGCAACTTGTGCATATCCAGACAAACAATTGTTTGATTGGGGCATGATGCGATTGCACCGTCCACCATATGGTGTAGGCGATGCTTTTGCCATGGAAGCTGATGATCAATTGCGGAAAAAGCGAGATGCTGAGAGGACATCAAGGTTAGAAGAGGAGGAGAAGAACCAAATTGAGACTAGGAAAAGAAAGTTTTTTGCTGAGATACTGAATGCTGTACGTGAATTCCATTTGCAAATTCAAGCTTCTATAAAACGTCGGAAACAGAGAAATGACGGAATTCAGGCATGGCATGGAAGACAAAGACAACGTGCTACAAGAGCAGAAAAACTGAGGTTCCAAGCACTAAAGGCAGATGATCAAGAAGCTTACATGAGATTGGTTAAGGAGAGCAAGAATGAGCGATTAACAACACTTCTTGAAGAAACAAACAAACTACTTGTAAACTTGGGTGCTGCCGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATCGAGACCTTGGATGAATCTGATGTTGATTTAACCGAGTTGGATTCTTCAAAGAATGCAACCCCTCAAGATCTACTCATAGATGAAGATTTAGATGCCATTGATTCTGACCGAAATGATGAAAGTGGTGATTTGCTTGAAGGACAGCGACAATATAACTCTGCCATTCATTCAATTCAAGAAAAGGTCACTGAACAGCCTTCCATGCTACAAGGAGGAGAATTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGCTTTCATTATTCAATAACAATTTAAATGGAATATTGGCTGATGAAATGGGGTTGGGAAAAACAATACAAACAATCTCATTGATTGCTTACCTCATGGAATACAAGGATGTGACTGGACCTCATTTAATAGTTGCTCCCAAGGCAGTACTGCCAAACTGGATTCATGAATTCACAACATGGGCCCCAAGTATCGCTGCTGTTCTTTATGACGGACGTCAGGAGGAGAGAAAAGCTATAAAGGAGGAGCTATTGAGTGAAGGAAAATTTTGTGTCTTGATTACACATTATGATCTCATTATGAGAGATAAATCATTTTTGAAGAAAATACACTGGTATTATATGATTGTTGATGAAGGCCATCGGCTGAAAAATCGTGATTGTGCTCTTGCACAGACACTTGCGGGCTACCAGATCAAACGTAGACTTCTCTTAACTGGTACACCTATCCAGAACAGTTTGCAGGAACTATGGTCCCTGCTTAATTTTCTCCTGCCACATATATTTAATTCTGTCCAGAACTTCCAGGAGTGGTTTAATGCACCATTTGCAGATCGGAGTGATGTTACTCTGACAGATGAAGAGGAGCTATTGATTATTCGCCGTCTGCATCATGTTATTAGGCCATTCATATTGAGGAGGAAAAAGGATGAGGTGGAAAAGTATCTACCTGAAAAGTCACAGGTCATACTAAAATGTGATATGTCAGCATGGCAGAAAGTATACTATCAACAAGTCACTTCTATTGGCAGAGTTGACACTGGTTCTGGCAAATCAAAGTCCCTACAAAATTTAACGATGCAGCTGAGGAAGTGTTGTAATCATCCATATCTTTTTATTTTGGGAGATTATAATATTTGGCGCAAGGAGGAGATCGTCAGAGCTTCTGGGAAATTTGAACTACTGGATCGTTTACTCCCAAAGCTACATAGAGCTGGGCATAGAGTCTTGCTTTTCTCACAAATGACTCGTCTTATGGACATTCTTGAAATTTATCTTCAGCTCCATGAGTTTAAATATCTGCGACTTGATGGTTCAACGAAAACTGAAGAAAGAGGGGCTTTAGTGAAGCAATTTAATGCTCCAGAATCCCCATTCTTCATGTTTCTCTTGAGTACTCGGGCCGGTGGTTTAGGTTTGAACTTACAAACTGCGGACACTGTTATTATCTTTGACAGTGATTGGAATCCTCAAATGGACCAGCAGGCAGAGGATCGAGCTCATCGTATTGGACAAAAGAAGGAAGTAAGGGTGTTTGTCCTGGTTAGTGTTGGATCAGTTGAAGAGGTTATCCTGGAGCGTGCAAAACAGAAGATGGGGATCGATGCCAAGGTTATCCAGGCTGGACTTTTCAACACAACTTCAACAGCTCAAGACCGGAGAGAGATGTTGGAGGAGATTATGCGCAGAGGAACTAGCGCACTTGGCACTGATGTGCCGAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGACGAAGAATTTTGGCTGTTTGAGAAAATGGACGAAGAAAGAAGACAGAAGGAGAAATATAGATCTCGTTTGATGGAAGAACACGAGGTACCTGAGTGGGTATACTCAGTACCTGACGGTAATGAAGAGAAGAACAAGGGTTCAGAAATTTTCGGCGTCTCTGGAAAACGAAAAAGAAAGGAGGTGATTTATGCTGATACACTGAGTGATTTGCAGTGGATGAAGGCTGTGGAAAATGGAGAAATTCCAACCCTTTCAATGAAAGGAAATAGAAGAGAGACTCCCTCACGTGAAGGCAGTGCATCAACCAGCAATATTACCAGCACAAGGGCAGAGGATAAGCTGGTAGAATTTGATGATAACGTACCTGTAATGAGTGAGGGGACAAGTGAAGACAATTCTGGTTTAGAATCAACCCCCAAGAGACAGAAGTCTGAAGGGGTAAGTATTAGAAAACACGAATTCCTGGCCGAGTCAGGAAGTGAATGGAGTCGATGTGTAATAACATGGAAAACACACAAGAAGAAGCGGTCAAGCTATGTCCAAGAGCCACCGTGTGACGAAAACGCTGACCACTTACTCATTCAAACGAAGACTCTAACGTGCGCTCAAACAAGTCAAAGACTACTAACATGCGCATATGGTCGTGAAGATGGGACCCTCATTGAATGTTTAGTCAACGAAGATCAACGGCTGATCAAGTTAATCAGGGACCCACTTATTATGAAGTGCCATTTATGCGTGATCGTGGGAACCAGTCAGCCAATAACAACTCCACCAGCTACTGGACCTACAGGCTATTTCATCGATTGCGGCTCCACTTCTCCCACCACACTCGATGGCCGAACCTGGCAGCCCGACGCCGCCTTCGTCTTCGCTGGATTCAACAAGAACATCACTGACCCCGTTCTTGACCCTACGCTTTCCACTGTTCGTTCCTTTCCTAGGGCTCTTAATCGGAAATTTTGCTATGTTGTCGGACCTGTTTTTCGTACTCGAAGGTATATGGTTAGAACTACGTACTACTATGGTGGAGTTAACGGCCTTGATTCGCCACCGGTTTTCGATCAGATTGTTGATGGGACTGTTTGGAGCGTGGTGAATACTACCGAGGATTATGATAAGGGTTTGACGTCGTATTACGAAGGGGTTTTCGAGGCCAAGGGGAAGTCCATTAGTCTGTGCATTGGTTCTAATACGTATACGGATTCTGACCCTTTTATTTCTGCCTTGGAGGTTGTCTTGTTGGGGGAATCTCTTTATAATACCACGGATTTCGTCAACCATGGCTTGCGTTTGGTTGCTAGGCACAGTTTTGGATACACTGGATCCAACTTACGGCATCCTGATGACCAATTTGATCGGTTTTGGCAACCATTTGGGAATAACAATCGGAATGTAACCAATAGAACTGTATCTGCCTCTGGTATATGGAATCTCCCTCCGTCTAAGATATTTGAAACGGAGCTGAGGACTGATAACCTGGAACCATTGGAGTTGAACTGGCCTCTTATTTCTCTTCCAGAAACAAATTTCACATATTACATTGCTCTATACTTTGCTAATGATCATCCTTCATCATCAGATAACTCAAGGGTGTTTAGCATAAGTCTGAACGGTATAACATATTACCATGATCTAAATGCAACTTCGGCAGGTCATGTTGTTTTTGCAAGTCGGTGGCCTCTTCATGGTCCAACAAAGATAACCTTGACTCCCTCTCCTCAGTCAAAACTTGGCCCATTGATCAATGGTGGAGAACTTTTTCACGTTGTGCCCCTTGAAGGAAGAACTCTTGTAAGAGATGTTATCAATCTGGAGAGAATAAAAAGGAGTCTGAAAAATCCCCCAACTGATTGGATTGGCGATCCATGCTTCCCCCAACAATATCGCTGGACAGGAATTACGTGTTCTGAAGGTTCTCGAATCCGTGTGATTACCTTAAACCTTACGAGTATGGACCTTTCAGGATCCTTATCACCTAGCATTGCCAATCTTACTGCATTGTCTGGAATCTGGCTTGGAAACAACAGTTTGTCTGGACCTATTCCGGATCTCAGTGCTCTGAAGTTGTTGGAAATAGTGCATTTGGAAGATAATAATTTCAGTGGAGAGATTCCATCGTCACTTGGAAATCTGTCTCGCTTGCAGGAACTGTTCTTATACAATAATAATTTGACTGGTGAAGTTCCTCAAAGTCTTACGAATAATGAAAGACTGGATCTTAGGATTCTTCCAGGAAACCATCTATTGGGGCCGCCACCTCCTTCTTAG 4962 43.07 MNMAHLDTDLTSLDHLHSTRSLISALNLLSRNLPLPPDLFEAVSSIYSAPHHQDPTPLNHSEEEVGESVQEDLLTDLGDALAKQRSNFVSGSGLEQSREERYRGRVRRRLDDLEELPSSRGEDLQTKCLLELCGLKLLDLQKKVRSDVSSEYWLQATCAYPDKQLFDWGMMRLHRPPYGVGDAFAMEADDQLRKKRDAERTSRLEEEEKNQIETRKRKFFAEILNAVREFHLQIQASIKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIETLDESDVDLTELDSSKNATPQDLLIDEDLDAIDSDRNDESGDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIAAVLYDGRQEERKAIKEELLSEGKFCVLITHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRDCALAQTLAGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFADRSDVTLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPEKSQVILKCDMSAWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFILGDYNIWRKEEIVRASGKFELLDRLLPKLHRAGHRVLLFSQMTRLMDILEIYLQLHEFKYLRLDGSTKTEERGALVKQFNAPESPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPDGNEEKNKGSEIFGVSGKRKRKEVIYADTLSDLQWMKAVENGEIPTLSMKGNRRETPSREGSASTSNITSTRAEDKLVEFDDNVPVMSEGTSEDNSGLESTPKRQKSEGVSIRKHEFLAESGSEWSRCVITWKTHKKKRSSYVQEPPCDENADHLLIQTKTLTCAQTSQRLLTCAYGREDGTLIECLVNEDQRLIKLIRDPLIMKCHLCVIVGTSQPITTPPATGPTGYFIDCGSTSPTTLDGRTWQPDAAFVFAGFNKNITDPVLDPTLSTVRSFPRALNRKFCYVVGPVFRTRRYMVRTTYYYGGVNGLDSPPVFDQIVDGTVWSVVNTTEDYDKGLTSYYEGVFEAKGKSISLCIGSNTYTDSDPFISALEVVLLGESLYNTTDFVNHGLRLVARHSFGYTGSNLRHPDDQFDRFWQPFGNNNRNVTNRTVSASGIWNLPPSKIFETELRTDNLEPLELNWPLISLPETNFTYYIALYFANDHPSSSDNSRVFSISLNGITYYHDLNATSAGHVVFASRWPLHGPTKITLTPSPQSKLGPLINGGELFHVVPLEGRTLVRDVINLERIKRSLKNPPTDWIGDPCFPQQYRWTGITCSEGSRIRVITLNLTSMDLSGSLSPSIANLTALSGIWLGNNSLSGPIPDLSALKLLEIVHLEDNNFSGEIPSSLGNLSRLQELFLYNNNLTGEVPQSLTNNERLDLRILPGNHLLGPPPPS 1653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21319700 21334697 - Lsi09G013380.1 Lsi09g01338 670951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01338 1653 PANTHER ATP-DEPENDENT HELICASE BRM 15 1042 - -
Lsi09g01338 1653 SMART SnAC_2 908 970 IPR029295 GO:0042393
Lsi09g01338 1653 Coils Coil 906 926 - -
Lsi09g01338 1653 Gene3D - 1337 1482 - -
Lsi09g01338 1653 CDD SF2_C_SNF 693 826 - -
Lsi09g01338 1653 Pfam Malectin-like domain 1165 1487 IPR024788 -
Lsi09g01338 1653 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 406 571 IPR014001 -
Lsi09g01338 1653 SMART ultradead3 390 582 IPR014001 -
Lsi09g01338 1653 MobiDBLite consensus disorder prediction 992 1007 - -
Lsi09g01338 1653 Pfam Snf2-ATP coupling, chromatin remodelling complex 909 970 IPR029295 GO:0042393
Lsi09g01338 1653 Pfam Helicase conserved C-terminal domain 702 815 IPR001650 -
Lsi09g01338 1653 Gene3D Ribonuclease Inhibitor 1498 1653 IPR032675 -
Lsi09g01338 1653 Gene3D - 365 617 IPR038718 -
Lsi09g01338 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 618 IPR027417 -
Lsi09g01338 1653 Gene3D - 624 922 IPR027417 -
Lsi09g01338 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 869 IPR027417 -
Lsi09g01338 1653 Coils Coil 188 215 - -
Lsi09g01338 1653 Pfam SNF2-related domain 397 682 IPR000330 GO:0005524|GO:0140658
Lsi09g01338 1653 PANTHER SNF2/RAD54 HELICASE FAMILY 15 1042 - -
Lsi09g01338 1653 SUPERFAMILY L domain-like 1523 1652 - -
Lsi09g01338 1653 MobiDBLite consensus disorder prediction 1022 1039 - -
Lsi09g01338 1653 SMART helicmild6 731 815 IPR001650 -
Lsi09g01338 1653 MobiDBLite consensus disorder prediction 980 1045 - -
Lsi09g01338 1653 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 705 872 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01338 - - - csv:101222943 2011.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00488 Lsi-Chr3:5575997 Lsi09g01338 Lsi-Chr9:21319700 6.21E-142 dispersed
Lsi05g00211 Lsi-Chr5:2880718 Lsi09g01338 Lsi-Chr9:21319700 3.87E-45 dispersed
Lsi05g00346 Lsi-Chr5:4366874 Lsi09g01338 Lsi-Chr9:21319700 9.09E-58 dispersed
Lsi05g01493 Lsi-Chr5:22749197 Lsi09g01338 Lsi-Chr9:21319700 2.20E-146 dispersed
Lsi05g02048 Lsi-Chr5:27425789 Lsi09g01338 Lsi-Chr9:21319700 1.03E-135 dispersed
Lsi09g01338 Lsi-Chr9:21319700 Lsi09g01406 Lsi-Chr9:22059956 1.54E-146 dispersed
Lsi11g00038 Lsi-Chr11:427165 Lsi09g01338 Lsi-Chr9:21319700 4.83E-62 dispersed
Lsi11g00899 Lsi-Chr11:11981518 Lsi09g01338 Lsi-Chr9:21319700 1.90E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25943 PF12819 Malectin_like 1.60E-59 CL0202 Lsi TR