Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01339 ATGTGGGAGTGCGACCATTTCAAAGCGACCTTCTCGCGAAAACCCCAGGGCCAGGCAAATCTGTTTCCTCACAGGGGAGAGAGAGCGATGACGATGGCGATACCAGGGAGCATTGTCGTTGTTCTTCTCCTTATGTTGCTTCTCATCCTCCTCCTCCTCCTCATTGCCTGCAAACCATGGCGTTTCTTTTCCTATTCCCGTTCTCGCACAATCAAGGTTCCTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGATGTCACTCAAAACCAATTCGGTGAGCTTCCCAGAGATTATGATCTGGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCCCCGAGATTACATGGACTGATTCATAAACAAAGACTGCCACCTTTATCTCCCCATTTAAATCAGGGTGATAGATTGGTTCAAGATGTAGTTCCCGATCCTTTAGAAGTTATATCAGTTGGTCAAACCCTTAAGCGTACTCACTTCGCAAACCAGATTCCAGAAGTTCAAAAGCATGCAAAACTGAGCCTGGAAAGTGATCAACTCCACGAAATTGCAAGTCAAGATATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTCACCTCCGGTCCTTCTCGTGGAGTGCGTTATTCAATACATTCTGCAAACACGTCTAGGCTCCCATTGACTCTTGGAAGAGTACCTCCTAGTGATTTACAGCTGAAGGATTCAGAAGTCTCAGGGAAGCATGCCTTGATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAATCAATCAACAATCCTGAGTCTGGAAGTAGACATTGGGGTGACCCAGTTGAGCTTACGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACATCTCAGATTGAGAACCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTCCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGCGATGGACATAGTGGAGTTGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCAGAGAAGGTTGCCACAATTCTATCTGATCCACTGAAAAGGGAGAGGGTAGTATCTCTTCGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACCGAGGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCCGATAATGATGAAAATTACTTTGTGCAATGTGCAAATGTTGGGGACTCTGCTTGTGTTCTGAATGTTCATGGGAAGCAGATGAAGATGACAGAAGATCACAGAATAACTAGCTCTTCAGAAAGACTCCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGAGAGACACCCATGTTGCTCATACCTTGCCTCCCTGCCTCAGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACAATCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGGGAGAAATACTCCACAAGTGCAGAAAATTCAGCCGAAAAGATTGCCAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTCATAGAATCACTTGTAAAGTTGAACCA 1770 44.01 MWECDHFKATFSRKPQGQANLFPHRGERAMTMAIPGSIVVVLLLMLLLILLLLLIACKPWRFFSYSRSRTIKVPDLERPLVSDAADVTQNQFGELPRDYDLEGALQTDGHFRSPRLHGLIHKQRLPPLSPHLNQGDRLVQDVVPDPLEVISVGQTLKRTHFANQIPEVQKHAKLSLESDQLHEIASQDISHGRSYLTLEVTSGPSRGVRYSIHSANTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLNNMKWELVDLGSLNGTLLNSQSINNPESGSRHWGDPVELTSGDVITLGTTSKVYVHITSQIENHIPFGVGLASDPMALRRGGKKLAMEDVCYYQWPLPGVDQFGLFGICDGHSGVGAAKSASEILPEKVATILSDPLKRERVVSLRDASDVLREAFSQTEACMNHYYEGCTATVLLVWADNDENYFVQCANVGDSACVLNVHGKQMKMTEDHRITSSSERLRIEQAGEPLKDGETPMLLIPCLPASGLNLARMLGDKFLKQQDNRFSSEPYISEVVHVDQGSKAFAVMAREKYSTSAENSAEKIANFLLGEARTLRTKDNTSIIFLDFEVSHRITCKVEP 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21336948 21342865 - Lsi09G013390.1 Lsi09g01339 670952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01339 590 CDD FHA 196 304 IPR000253 GO:0005515
Lsi09g01339 590 PANTHER PROTEIN PHOSPHATASE 2C 70 63 539 - -
Lsi09g01339 590 Gene3D - 325 581 IPR036457 -
Lsi09g01339 590 SUPERFAMILY SMAD/FHA domain 195 306 IPR008984 GO:0005515
Lsi09g01339 590 Gene3D - 190 324 - -
Lsi09g01339 590 PANTHER PROTEIN PHOSPHATASE 2C 70 539 589 - -
Lsi09g01339 590 CDD PP2Cc 330 578 IPR001932 -
Lsi09g01339 590 ProSiteProfiles Forkhead-associated (FHA) domain profile. 222 273 IPR000253 GO:0005515
Lsi09g01339 590 PANTHER PROTEIN PHOSPHATASE 2C 539 589 IPR015655 GO:0004722|GO:0006470
Lsi09g01339 590 ProSiteProfiles PPM-type phosphatase domain profile. 318 578 IPR001932 -
Lsi09g01339 590 SMART PP2C_4 312 576 IPR001932 -
Lsi09g01339 590 Pfam FHA domain 223 298 IPR000253 GO:0005515
Lsi09g01339 590 Pfam Protein phosphatase 2C 330 539 IPR001932 -
Lsi09g01339 590 PANTHER PROTEIN PHOSPHATASE 2C 63 539 IPR015655 GO:0004722|GO:0006470
Lsi09g01339 590 SMART FHA_2 221 273 IPR000253 GO:0005515
Lsi09g01339 590 SUPERFAMILY PP2C-like 331 578 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01339 Lsi-Chr9:21336948 Lsi04g02061 Lsi-Chr4:27731720 6.23E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01339 K01090 - csv:101217195 981.089