Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01341 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTTGCCTTGTCGAGAAGATCGGCTCCAGCATCCGTAAATCTCGAAATGGACTGTTTTCTAAGCAGTCACTGCGGGCTCTGCCTCCGGTTGCGAAGGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGTGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCGGCCAATAGTGCTTCAAGGGAGAAAGCGCAAGCTCACATACGGGAGCTGGAGGAGGAAGTGAGGCTTTTGAAGAATCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTGTTAGGGAAATTTGGGTCTTTCCCCGAGTCTGTTATAAAGACCTACACGAAGCAGCTATTATTAGGGCTTGAGTACCTTCATAAGAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTTTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACTAAGTCCCATCCACCCATTCCTGAGCATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAGTGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGCGAGTATCAAGAACCTGTTGCGGCAGTCCGTGCCTCTTCTGTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAACTCTAATGATCTTAAAAAGTCTACAATCCAACGTTCAACCTGTGAGGGGTTGAAAGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACGGTCCAACTGGGGCTCAAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGCTAGTTCATCAATGAAGTACAAATCTATTATATCATCAACTGATTTGAATAAGGTATATATTGATTCTCTGATTGTGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCGTTCAAACTGGCAAGGGGAATGACTTCACTTTTCCATGTGGTCAGTCAGCAGCTGAGGATGATGAAGAGGTTACGGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTGTAGAACTGAAGAAGCTGCAAACACCTTTATACGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCCTTAGGAACAGTTGGAATTGAGAATATCAAGAGTGCATCTAATTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGTTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCTAGCCGTCAGAGCCGTATAAAACAAGCTAGTATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCGCCTCAACTTGGGGAATGGAACAAATTACTTCAAAACCAGCCAGACTCTTCCACACCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGAAAGCGAGTGCCATACCATGAGTTGACTGGGATTAAGGATAAGACACCTGTGTCAGCTTCGTTAACACCTAGCTTGATAAGCCATGCTCATCCCTGGGTGGTCGATGCTCCATCTCAACTCAGTCTCAGGGAACGGCCAATGCATTTTTTATTCTTCAATGCCCCATAG 2058 44.17 MQDFFGSVRRSLVFLAPDGDDGGRFGCLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPVAAVRASSVESGKQMADSRLNSNDLKKSTIQRSTCEGLKDICEMGSLRCSSVFSGNYGSRSNWGSSNFEDDMCQIDDKDLFASSSMKYKSIISSTDLNKVYIDSLIVSFNPMCEPTDDLDESSELGGNLMELSGVQTGKGNDFTFPCGQSAAEDDEEVTESKIKAFLDEKAVELKKLQTPLYEEFRSTVNAANALGTVGIENIKSASNFLKLPPKCGSPSKLRGKRLSSIDAGNCSSRQSRIKQASILQDRALQEIQSPQLGEWNKLLQNQPDSSTPSFSERQRKWKEELEEELKRKRVPYHELTGIKDKTPVSASLTPSLISHAHPWVVDAPSQLSLRERPMHFLFFNAP 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21376951 21381234 - Lsi09G013410.1 Lsi09g01341 670954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01341 685 CDD STKc_MAPKKK 65 327 - -
Lsi09g01341 685 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01341 685 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01341 685 PANTHER MAP KINASE KINASE KINASE 47 557 - -
Lsi09g01341 685 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01341 685 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 47 557 - -
Lsi09g01341 685 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Lsi09g01341 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Lsi09g01341 685 Coils Coil 98 125 - -
Lsi09g01341 685 Gene3D Transferase(Phosphotransferase) domain 1 65 367 - -
Lsi09g01341 685 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01161 Lsi-Chr3:21951256 Lsi09g01341 Lsi-Chr9:21376951 1.60E-46 dispersed
Lsi09g00476 Lsi-Chr9:5009804 Lsi09g01341 Lsi-Chr9:21376951 3.79E-65 dispersed
Lsi09g01341 Lsi-Chr9:21376951 Lsi11g00542 Lsi-Chr11:5665789 0 dispersed
Lsi09g01341 Lsi-Chr9:21376951 Lsi05g01214 Lsi-Chr5:20005153 9.09E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83912 PF00069 Pkinase 5.50E-73 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01341 - K20606 csv:101217427 1177.93