Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01342 ATGGGGTTTGATCTGGAGTCTCTGTCGGAGGCAACATCCGGAGCCATTGGAGCTCTGGTGAGTACCACCGTTTTATATCCTCTTGATACTTGCAAAACTAAGTATCAAGCTGAGAATCAGTCTCAACATCAGCGGAAGTACAGAAACATATCTGATGTGCTATGGGAAGCAATTTCAACTGGTCACGTGGGTTCGTTATACCAGGGTCTTGGCACAAAGAACTTCCAGTCATTTATTTCATCGTTCATCTACTTCTATGGATACAGCTTTTTAAAGAGAATCTACTTGAAGAGAAGTGGGAATAAAAAGATTGGAACAAGAGCAAATCTGATTGTTGCTGCAGCAGCTGGGGCTTGTACAGTTGTATTGACACAGCCTCTGGATACAGCATCCTCTAGGATGCAGACAAGCGAGTTCGGGAAGTCAAAAGGACTCTGGAAGACTCTCACGGAGGGTACCTGGAGTGAAGCGTTTGATGGTCTCGGTATATCCCTTCTTTTGACATCAAACCCATCTATTCAGTATACCGTGTTTGATCAACTGAAACAAAGGTTGCTCAGGACTCAGCTGACGCGTGAATCGGGTATAGAGTCATCACCGGAAGCTCTTTCAGCCTTTTCTGCTTTTGTCCTTGGCGCCCTCTCGAAATGTGTTGCTACAATCTTGACATACCCTGCTATAAGGTGTAAGATTGTGATTCAGGCTGCAGAATCAGGTGAAGAAAAGAACGAGGACAAACAGCACGACGATAAAAAAACCGTGTCGGGTGCACTTAATACTATTTGGAAAAGGGAAGGCTTGCTAGGATTTTTCAAAGGATTACAAGCGCAAATACTGAAGACTGTATTGAGCTCTGCATTACTTTTGATGATAAAAGAGAAGGTTGCAAAGACGTCTTGGGTCATATTGCTTGCACTTAGAAAATATCTTTTTATTACCAATACAAGAAGATTAAAGGGTGCTTGA 966 42.96 MGFDLESLSEATSGAIGALVSTTVLYPLDTCKTKYQAENQSQHQRKYRNISDVLWEAISTGHVGSLYQGLGTKNFQSFISSFIYFYGYSFLKRIYLKRSGNKKIGTRANLIVAAAAGACTVVLTQPLDTASSRMQTSEFGKSKGLWKTLTEGTWSEAFDGLGISLLLTSNPSIQYTVFDQLKQRLLRTQLTRESGIESSPEALSAFSAFVLGALSKCVATILTYPAIRCKIVIQAAESGEEKNEDKQHDDKKTVSGALNTIWKREGLLGFFKGLQAQILKTVLSSALLLMIKEKVAKTSWVILLALRKYLFITNTRRLKGA 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21385459 21388232 + Lsi09G013420.1 Lsi09g01342 670955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01342 321 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 319 IPR045900 GO:0005347|GO:0006635|GO:0015217
Lsi09g01342 321 Pfam Mitochondrial carrier protein 203 297 IPR018108 -
Lsi09g01342 321 Pfam Mitochondrial carrier protein 6 98 IPR018108 -
Lsi09g01342 321 Pfam Mitochondrial carrier protein 104 186 IPR018108 -
Lsi09g01342 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
Lsi09g01342 321 Gene3D Mitochondrial carrier domain 2 299 IPR023395 -
Lsi09g01342 321 SUPERFAMILY Mitochondrial carrier 8 294 IPR023395 -
Lsi09g01342 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Lsi09g01342 321 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 1 319 - -
Lsi09g01342 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 298 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01342 - - - csv:101217653 558.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00958 Lsi-Chr4:10015307 Lsi09g01342 Lsi-Chr9:21385459 2.23E-31 dispersed
Lsi09g01342 Lsi-Chr9:21385459 Lsi11g00534 Lsi-Chr11:5615190 3.97E-137 dispersed
Lsi09g01342 Lsi-Chr9:21385459 Lsi08g01194 Lsi-Chr8:20513216 6.05E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g454 . . . . . . Bma04g01199 . . Cmo17g00246 . . . . . . . . . . . . . . Cla06g00557 Cam06g0598 Cec06g0596 Cco06g0603 Clacu06g0584 Cmu06g0579 Cre06g1345 Cone14ag0831 . . . . . . . . . . . . . . . . . . . Cma17g00259 . Car17g00233 Cpe12g00215 . Bhi12g01818 . . . . . . . . . . . . . Lsi09g01342 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001531 4 2 2 4 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 3 2 2 3 2 72