Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01345 ATGGTCGCTTGTGTCGCCGCTACGCACTTGCACGGTGCAATGGCATTGCAGAAAATCAGCAACTCCAACTTGCAGGTGAGGTTCTGTAATGGAGAATTCATGGGGAAGAAGCTTACATTGCAACAGAGGAAAAGAGATGTTAATTACATTCCAAATCTCAAATGGAAAGTTTGTATGTCGTCTCTTGTTGCCAATATAGCGGCTGAATCCAAGTTGAGGGAATTGAACATGGAAAAACATGACTCGAGGACGGTGGTAGCGATTATACTGGGAGGTGGAGCAGGAACTCGTTTGTTCCCGCTCACCAAACAGAGAGCAAAACCGGCGGTTCCGATTGGTGGAGCTTACAGGCTGATTGATGTGCCGATGAGCAATTGTATAAACAGTGGAATCAACAAAGTTTACATTCTCACACAATTCAATTCTACATCACTCAATAGGCATCTCGCTCGTGCCTACAACTTTGGTAGTGGAGTCACCTTGGGAGACGGTTTTGTTGAGGTTCTAGCAGCGACTCAGACTCCGGGAGAGGCCGGGAAGCGGTGGTTCCAAGGGACTGCCGATGCCGTACGACAGTTCCATTGGCTTTTTGAGGATGCAAGAAGCAAGGAAATTGAAGATGTGTTGATTCTTTCTGGGGATCACCTGTACCGAATGGACTACATGGATTTCGTTCAAAATCATCGGCAGAGTGGTGCAGACATCACTCTTTCTTGTATTCCAATCGATGACAGTCGAGCGTCAGATTTTGGGCTAATGAAGATCGACAATAGCGGAAGGGTTCTTTCATTCAGTGAAAAACCTAGAGGGAAAGACCTGAAGGCGATGGAAGTGGACACCACAGTTTTAGGACTGTCAAAGGATGAGGCACTGAGAAAACCATACATAGCTTCTATGGGAGTTTATGTCTTCAAAAAGGAGATACTTCTAAACATTTTAAGATGGCGCTTCCCAACTGCAAATGACTTCGGATCAGAGATAATCCCGTTCTCAGCAAGAGAATTCTTGATGAAGGACACAGTAATGCTTGGAGCTGACTTCTATGAAACTGATGGAGAAGTTGCTGCACTTTTAGCTGAGGGAAGAGTGCCAATTGGAATTGGAGAAAATACAAAAATCAAGGACAGCATCATTGACAAAAATGCCAGAATAGGGAAGAATGTTGTTATTGCTAATTCAGAGGGCGTTCAAGAGGCAGATAGGTCTTCAGAAGGCTTTTACATCCGCTCTGGTATTACCATTATACTAAGGAACTCAGTAATTAAAGATGGCTTTGTCATATAG 1284 44.31 MVACVAATHLHGAMALQKISNSNLQVRFCNGEFMGKKLTLQQRKRDVNYIPNLKWKVCMSSLVANIAAESKLRELNMEKHDSRTVVAIILGGGAGTRLFPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSTSLNRHLARAYNFGSGVTLGDGFVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDARSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCIPIDDSRASDFGLMKIDNSGRVLSFSEKPRGKDLKAMEVDTTVLGLSKDEALRKPYIASMGVYVFKKEILLNILRWRFPTANDFGSEIIPFSAREFLMKDTVMLGADFYETDGEVAALLAEGRVPIGIGENTKIKDSIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGITIILRNSVIKDGFVI 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21410127 21419793 + Lsi09G013450.1 Lsi09g01345 670958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01345 427 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 25 336 IPR011831 GO:0005978|GO:0008878
Lsi09g01345 427 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 337 427 IPR011831 GO:0005978|GO:0008878
Lsi09g01345 427 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 297 307 IPR005836 GO:0005978|GO:0008878
Lsi09g01345 427 CDD ADP_Glucose_PP 87 329 - -
Lsi09g01345 427 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 25 336 - -
Lsi09g01345 427 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 337 427 - -
Lsi09g01345 427 SUPERFAMILY Trimeric LpxA-like enzymes 367 427 IPR011004 -
Lsi09g01345 427 Pfam Nucleotidyl transferase 87 333 IPR005835 GO:0009058|GO:0016779
Lsi09g01345 427 SUPERFAMILY Nucleotide-diphospho-sugar transferases 84 389 IPR029044 -
Lsi09g01345 427 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 182 190 IPR005836 GO:0005978|GO:0008878
Lsi09g01345 427 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 66 361 IPR029044 -
Lsi09g01345 427 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 91 110 IPR005836 GO:0005978|GO:0008878
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01345 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - csv:101204159 628.632
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01444 Lsi09g01345 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01345 Lsi-Chr9:21410127 Lsi10g00383 Lsi-Chr10:5837261 2.72E-32 dispersed
Lsi05g01444 Lsi-Chr5:22330567 Lsi09g01345 Lsi-Chr9:21410127 2.94E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g451 . . . . . Bpe14g01312 . . . Cmo17g00248 . Cma14g01686 . Car14g01520 Sed02g1259 . Cpe03g01421 Bhi01g00844 Tan10g0872 Cmetu11g1384 Lac12g2316 Hepe05g1531 . Lcy11g1518 Cla06g00553 Cam06g0596 Cec06g0594 . Clacu06g0582 Cmu06g0577 Cre06g1343 . . Cone7ag0226 . Lsi05g01444 . . Cme06g00631 . . . . . . Bma02g00687 . . . Cmo14g01731 . Cma17g00261 . Car17g00235 Cpe12g00217 . Bhi12g01815 . . . . . . Cla05g00567 Cam05g0623 Cec05g0633 Cco05g0628 Clacu05g0619 Cmu05g0587 Cre05g0655 Lsi09g01345 . Chy06g00601 Cme11g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003296 1 2 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 1 1 2 2 2 2 1 1 2 2 2 2 1 49