Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01355 ATGGAAATGGATCGCGATGATTTGAGTATTCGATTATCTGCTATATGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGACGACAGAATTCCTTGCCAAATTGAAGAGTACTTGTCATCATTCAAAAGTGATCAGAAATTCACCACCGATCTTTATGGCTGCTTAATTGTGCCTAATTATTTTAGTCGGTGGGTCGGACTCCTGGTTAAACTGCTTTCTGAAGCTGCTGGTCTGTTCTTAGGCTCTGTTGGAGCTGCCCATAACAAAGATGAATTGAAGAAATTGAATATCACTCACATTTTAACCATTGCTTGTTCCTTGCCACCTGCTGATCCAAATGATTTTGTATGTAAAGTAGTTGGTGTGCTTATCATTGTAACAATTTATGACATCATATCGTTGCTTGCAATTGTCATGATTCATAACGTAAGTTATCAATGTTCATCGTTGTTTTTCTATCAAATAGAATTCCTACTGCTGACATCCAATGTAGTCTTGGACACTAGAGATGCAGATATTAAACAGCACTTTGACGATTGTTTCAATTTTATCGATGAGGGAAGACAATCTGGTGGAGGGGTCTTAATTCATTGCTTTGCTGGAATATCCAGAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGCGTGGTATGAATCTAACTCAAGCATTGGAACACGTCAAGAGTAGACGACCACAGGCAGCTCCAAACGTCAGTTTCATGGTTCAACTCAAGGACTTTGAAACAGCTCTTCAAGGGGGAGAAAGAGTGGACCAATCAAACGACAAATTGATAACACGGGCCTTGACTAGGCCCATATTCAAATGGTCTGTCTGGCATAGCAATCCACTGGACAGCCCAAATCCACTTTTGCTGGCCCATTAG 888 40.2 MEMDRDDLSIRLSAIWNIIGLKRSLKDDRIPCQIEEYLSSFKSDQKFTTDLYGCLIVPNYFSRWVGLLVKLLSEAAGLFLGSVGAAHNKDELKKLNITHILTIACSLPPADPNDFVCKVVGVLIIVTIYDIISLLAIVMIHNVSYQCSSLFFYQIEFLLLTSNVVLDTRDADIKQHFDDCFNFIDEGRQSGGGVLIHCFAGISRSVTITVAYLMKKRGMNLTQALEHVKSRRPQAAPNVSFMVQLKDFETALQGGERVDQSNDKLITRALTRPIFKWSVWHSNPLDSPNPLLLAH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21512137 21516770 + Lsi09G013550.1 Lsi09g01355 670968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01355 295 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 76 254 - -
Lsi09g01355 295 Pfam Dual specificity phosphatase, catalytic domain 132 250 IPR000340 GO:0008138|GO:0016311
Lsi09g01355 295 SMART dsp_5 70 251 IPR020422 GO:0006470|GO:0008138
Lsi09g01355 295 SMART ptp_7 151 253 IPR003595 -
Lsi09g01355 295 Gene3D Protein tyrosine phosphatase superfamily 75 272 IPR029021 -
Lsi09g01355 295 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 76 254 - -
Lsi09g01355 295 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 77 253 IPR029021 -
Lsi09g01355 295 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 233 IPR000387 GO:0016311|GO:0016791
Lsi09g01355 295 ProSiteProfiles Dual specificity protein phosphatase domain profile. 70 254 IPR020422 GO:0006470|GO:0008138
Lsi09g01355 295 CDD DSP 77 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01355 - - - bhj:120092603 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01680 Lsi-Chr6:26986337 Lsi09g01355 Lsi-Chr9:21512137 7.98E-12 dispersed
Lsi09g01355 Lsi-Chr9:21512137 Lsi11g01661 Lsi-Chr11:24894389 4.68E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g434 . . . . . . . . Cmo08g01140 . . . . . . . . . . . . . . . Cla06g00547 Cam06g0590 Cec06g0587 Cco06g0595 Clacu06g0577 Cmu06g0571 Cre06g1337 Cone14ag0823 . . . . . Chy11g01429 . . . . . . . . . . . . Cma08g01167 . Car08g01045 . . Cpe17g00126 Bhi12g01806 . . . . . . . . . . . . . Lsi09g01355 . . Cme11g01934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004089 1 2 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 7 3 1 39