Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01361 ATGGCAGTGAAGAGTGATGTCTTGTTTAACACTGTAATGTTCTCTTGTTTGCTAATAGGGATAAAAACTGAGGCACAACCAGAGGAATGGTTTCAAATGCAGGCAGTACTTCGTGTGAGCTTAGGAAATTTCCTGTTTTTTGCTATATTTGCCCTTATAATGATTGGCATAAAAGACCAAAATGATAGACGTGATGCATGGCATCATGGAGGATGGATGGCTAAGATGGTGATCTGGATTTTGCTTGTCGTCCTCATGTTTCTCCTTCCAAATTTTATCTTCTCAATATATGGTGAGTTATCTCTTGTACTCTTCCTTCCTGAACCGGAGTTCTATCCATATTTGGGGCTGGGTTGTTTTTGTTGGTCCAAGTGGTTCTCTTACTTGACTTTACACACTCCTGGAATGATTCCTGGGTTGAGAAGGATGAACAGAAATGGTCAGCTCAAGTATATTGCTCTTCTTGTGGTATCAATTGTTTGCTATCTTGCAGCATTCACTTTCTCGGGACTTTTGTTTATCTGGTTCAATCCCTCAGGCCATGACTGTGGCCTCAATGTCTTCTTCCTAGTCATGACTATGATTCTTGCATTTGTATTTGCCGTAATTGCTTTGCACCCAGCGGTAAATGGAAGTCTATTACCTGCTTCTGTGATATCAGTTTATTGCGCATATGTGTGCTATACTGGTCTCTCTAGTGAACCACGTGACTACGTGTGCAATGGTCTTCATACAAAATCTAAAGCAGTCTCCGTTGGTGGAAGTAAACCTCTTCTTGAATCAGAAGACTTGGAGGATGGAAAGAACAAAAAAACTGAGGGAGAGGGAGAGCCTGTCAGTTACTCCTATACATTCTTCCACCTGATATTTGCTCTTGCAAGCATGTACTCAGCCATGCTTCTTTCTGGCTGGACTAGCCTCAATGAGAGCTCGGACCTCATAGACGTCGGCTGGACATCGGTTTGGGTACGTATCTGCACGGAGTGGGTCACTGCTGCCACTCTCGTCCGTGGCGCGTGTGAGATCCTCAATCAGACGGCTCACAATCGCCGGTCCGTCACCAGCACTTCGCTAACGTGCGCCATTCTTCTTCTTCTTCATCAATCTTCCTTTCTTTCAAATCCCATTTTTACACGAAAGCTCCCACTGGGCTTTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCAATTCTCACCTCATCGTCGTCAATTTCCAAATCCAGGACTTCAACAAACCCTAGCCCTACCAATTCCCTTCTCTGTAAACACTCTCCATCGGCAACCCTTGACCTTCTTATCCTTATTCTCGTTTTATTTTCTGGTACCTTCCTTGTAACGTCATATTTCTCTTACATTTTCAACTCTTTGTCGATTCTCTTGTCGCATTCCGCCCCGCAGCTTCCTCAATTCCCGTTTCCGTTTATTGCTGGGTTTTTGCTCTTCTTTTGTGTGACTATTGGTGTGTTTGAGATTTGTTGTGGCGCTAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAGGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAGTGGGTCGAAGGAGATTGATAAATTGCCGTGGAAGGGAGGTAGTGAGGCCAACCCGGATTATGAGTGCTTGAGGTCTGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTACTTTTCCGGGCGCGCTGTGGATGCCCCATCGCGAAGCTTGAAGGCTGGGGAACTAAGCGCGGGCGGCGGCATAAGAATTCAACTCCCGTTGACAGAGATCAGATTAAGAATCTAAAATTGCCACCAGAAAAGAAAAAGACGACGACGACGACTAATCATGGATGGGAAGCTATGCAAGCAAGTTTCAGGGGCTCGGTTAGCATACCCCAAGGATCTGGCTACACTGGGTCTTAA 1950 45.85 MAVKSDVLFNTVMFSCLLIGIKTEAQPEEWFQMQAVLRVSLGNFLFFAIFALIMIGIKDQNDRRDAWHHGGWMAKMVIWILLVVLMFLLPNFIFSIYGELSLVLFLPEPEFYPYLGLGCFCWSKWFSYLTLHTPGMIPGLRRMNRNGQLKYIALLVVSIVCYLAAFTFSGLLFIWFNPSGHDCGLNVFFLVMTMILAFVFAVIALHPAVNGSLLPASVISVYCAYVCYTGLSSEPRDYVCNGLHTKSKAVSVGGSKPLLESEDLEDGKNKKTEGEGEPVSYSYTFFHLIFALASMYSAMLLSGWTSLNESSDLIDVGWTSVWVRICTEWVTAATLVRGACEILNQTAHNRRSVTSTSLTCAILLLLHQSSFLSNPIFTRKLPLGFLYNMRNLLVPTTAMPPSSILTSSSSISKSRTSTNPSPTNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFIAGFLLFFCVTIGVFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNSTPVDRDQIKNLKLPPEKKKTTTTTNHGWEAMQASFRGSVSIPQGSGYTGS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21627422 21639636 + Lsi09G013610.1 Lsi09g01361 670974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01361 649 PANTHER SERINE INCORPORATOR 148 253 IPR005016 GO:0016020
Lsi09g01361 649 PANTHER SERINE INCORPORATOR 256 334 IPR005016 GO:0016020
Lsi09g01361 649 PANTHER SERINE INCORPORATOR 28 101 IPR005016 GO:0016020
Lsi09g01361 649 MobiDBLite consensus disorder prediction 616 649 - -
Lsi09g01361 649 MobiDBLite consensus disorder prediction 405 424 - -
Lsi09g01361 649 Pfam Serine incorporator (Serinc) 145 247 IPR005016 GO:0016020
Lsi09g01361 649 Pfam Serine incorporator (Serinc) 23 102 IPR005016 GO:0016020
Lsi09g01361 649 Pfam Serine incorporator (Serinc) 259 333 IPR005016 GO:0016020
Lsi09g01361 649 PANTHER BNAANNG35710D PROTEIN 148 253 - -
Lsi09g01361 649 PANTHER BNAANNG35710D PROTEIN 256 334 - -
Lsi09g01361 649 PANTHER BNAANNG35710D PROTEIN 28 101 - -
Lsi09g01361 649 MobiDBLite consensus disorder prediction 611 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01361 K23544 SERINC1; serine incorporator 1 - csv:101215629 464.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01477 Lsi-Chr2:20525619 Lsi09g01361 Lsi-Chr9:21627422 4.17E-26 dispersed
Lsi02g02655 Lsi-Chr2:32985387 Lsi09g01361 Lsi-Chr9:21627422 9.54E-104 dispersed
Lsi09g01361 Lsi-Chr9:21627422 Lsi11g00272 Lsi-Chr11:2773557 4.51E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g423 . . . Bda08g00389 Bpe04g01190 . Bma04g01182 Bma05g00942 Cmo08g01145 Cmo17g00262 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01435 . . . . . Bpe05g00753 . . . . . . Cma08g01173 Cma17g00275 Car08g01050 Car17g00250 Cpe12g00228 Cpe17g00122 Bhi12g01794 . . . . . . . . . . . . . Lsi09g01361 . . Cme11g01941
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004677 2 2 2 2 2 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 42