Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01363 ATGGCGGTATCTGTTCAAAACAGTCTTTGGGACAGAGTTACAGAACTAACGAAGGTGGCTCAACAAAAGGGAGTTGATCCTCTTCTTTGGGCCATTCAGCTGTCTTCGAATTTGAACTCGGCGGGAGTCGCTTTGCCGTCAGTTGAGCTCGCTAACCTGCTGGTTTCGCACATTTGTTGGGATAATAATGAGCCTGTTTCATGGAAGTTCCTTGAGAAGGCGTTGATGTTGAATATTGTACCCCCGATTCTCGTTCTTGCCTTGCTCACAACCAGGTTCCAAAGTCGTGTTCTGTGGGTGTTCGTTTGTGAGTTGAGCGAACCAGTGTTGATAATTGTCATTGCTTCTCTCTACAGAGTCATTTCAAGAAGACAATTCCAGCCAGTAGCATATCGACTCTATCTGGAACTCCTTCGAAGACATGCTTTTAAACTGAAATCTCATATCCATGGCCTCAAATACAAAGAGGTCATGGCCTCTGTTGATGCTGTTCTTCGTCTTTCTGAGACATTCAATTTGCCAGCAAATGATCCTGGGACCCTTGTGGTTGAGTTTATATTTTCAATTGTCTGGCAGTTGCTTGACGCAACACTTGTTGATGAAGGGTTACTGGAACTTATTGTGGAAGAGAAATCCAAATGGCCGACAAAACCTCAAGAAATGGAACTGGATGGTCACAATGGTTATGATGATAAATGGACTGAACAACGTGAGAGATTGTGGAATGTAAACATTGAACTGACAATTGACATAATTGGGAAATTTCTTCAAGATGCGGTTACTTCAAGGATTCTTCACTTGGCTTGCAGGAATATGCCTTCGCATTGGGCAGATCTTATTCAGCGACTCCAGTTGCTGGGAGAAAATTCTTCCGTATTGAGAAACTCAAAATCTCTGAACTCAGAGATTTTTCTGCAGTTCACGTCTGATACTTGGACAATCTTCTCTCAAGAATTTAAACAAAATTCACAACAGAAGTTCCATCCAATTAGAGCATTTGGATCTCCAGCAGCTTCTGCTAGTTTATGTCATAGAACTCGTTATTCTGCACTTTGGCTTCCTCTCGATCTAGTTCTAGAAGATGCAATGGATGGATATCAAGTAGAAGCAACAAGTGCTATTGAAAAAATTACCAGTTTGGTCAAAACCCTTAAGGCAATAAATGGAACTAGTTGGCATGATACCTTCTTGGGTCTGTGGATAGCAGCTCTTCGTCTTGTTCAAAGGGAAAGGGATCCCATCGAGGGGCCTGTGCCACGCATAGACACTCGTCTATGCCTTCTATTGTGTATCACAGTCCTTGTGATTGCTGATCTGATTGAGGAGGAGGAGGAGAGTACGACAATTGATGAAACAGAGTATGTTGCCTCCAATCACTGGAAAGAAAAAAAGGCCCCTGGAAAGTGTCGTAATGAACTAATTTCTAGCCTACAGATATTGGGTGAATATCAGAGCTTGCTGACTCCTCCTCAGGGTGTTATCTCTGCATGCAATCAGGCAGCTGCCAAAGCAATGATGTTTGTATCTGGAATCAGTGTTAGTAATGCATATTTTGAATGCATCAATATGAAAGACATGCCAATGAACTCTTCTGGCAATATGCGTCATTTGATAGTGGAGGCTTGCATTGCTAGAAATCTCCTGGATACATCTGCATATTTCTGGCGAGGCTATGTGAACGGTTGCATTAGCCAAATGCCTCAAAGTATACCACCTCAGGCACCTGGTTGGTCAGCTTTCATGAAGGGGGCTCCACTTAATCATATAATGATAAATGCCTTAACTTCAACTCCTGCTTCAAGCTCGATTAACACCCAACTTGGAGGCGTGAGGCCATGTCCTTTTCCACTAGTCGTCCTCACTTCTCGGCTTGGCCCTAAGGGCCAGTTGAGGGAGGCCTCTCTCTCTGCCTCATGGGCCTGTAGCCCAATTGGGACTGGGTCTGCCCTGGCCCATGGCTTAGCAGAACTGGAGAAAATATTTGAGATAGCAGTAAAAGGATCAGATGAAGAGAAGATATCTGCAGCAACCATTCTTTGTGGGGCCTCCTTGATCCAAGGCTGGAATATTCAGGAGCATACTGTCCATTATATTACTAGGTTACTTTCTCCTCCAGTTCCCACAGATTACTCTGGATGTGAAAGTCATTTGATAGGCTATGCTCCAATGCTGAATGTGCTTATTGTTGGAATAGCATCTATTGATTGTGTTCAGATTTTTTCTCTACATGGTTTGGTATGTTCTTCATTGCTGCCTGATATCTACATATTGAGACACTATTCTGTTACTGGTTTAATTAGAACCATTTACTTTGATGTATTCTTCCCGACTGTTAATTGCTGTTTCTGTATCCTCTTGTTGGTTCCACAGCTTGCATGTTCACTGATGCCAATCTGTGAGGTTTTCGGCTCATGTGTGCCGAACCTCGATTGGACGTTAACTACAGGGGAAGAAATCTCTGCTCATGCCGTGTTTTCAAATGCGTTTACTCTTCTCTTAAAGCTTTGGAGATTTAACCATCCTCCTCTAGACCATGGAGTGGGCGATGCACCCACGGTTGGATCTCAACTTACTCCAGAATATCTACTCTTAGTGAGAAATTCTCATCTGGTATCTGGAAATGTCCACAAAGATCGCAATAAAATGAGACTTTCAGCTGTAGCAAGTTCCTCTTCCCCCCAACCAATATTTGTAGACTCATTTCCCAAATTGAAAGTCTGGTATCGGCAGCATCAAGCATGTATAGCGTCAACCCTCTCTGGTCATGTTCATGGCAACCCAGTTCATCAGACTGTTGATGGACTGCTTACCATGATGTTCCGAAGAATTAGTGGGGGAAATCAACCGTTAACTTCAGTTACTTCTGGAAGCAGTAGTTCTTCTGGGCCTGGAAATGAAGATTCTTCTTTAAGACCCAAATTGCCTGCCTGGGATATAATGGAAGCTGTTCCTTTCGTGATTGATGCTGCTCTAACAGCCTGTGCTCATGGAAAGCTTTCTCCTCGTGAGTTGGCTACAGGACTCAAAGATCTAGCCGATTTTCTACCAGCATCTTTAGCCACCATTGTGAGCTACTTTTCTGCAGAAGTAACTCGGGGATTATGGAAACCTGTTTTTATGAATGGAACAGATTGGCCAAGCCCAGCAGAAAATCTTTCTAATGTTGAAGAGCAGATCAAGAAAATCCTAGCTGCTACTGGCGTTGATGTCCCTAGCCTGGCTGCAGGTGGAAGCTCTCCAGCTACACTTCCTCTGCCCTTGGCTGCCTTTGTAAGCCTTACTATAACCTACAAAATTGACCGAGCATCCCAACGTTTCCTCAATTTGGCTGGCCCAGCTTTGGAGTCTCTCGCTGCTGGTTGTCCATGGCCATGCATGCCAATTGTTGCTTCCTTGTGGACTCAAAAAGCCAAACGCTGGAGTGATTTCCTGGTTTTTTCAGCATCTCGTACAGTTTTCCTTCAGAACTGCGATGCTGTGGTTCAGCTGCTCAAAAGCTGCTTCACCGCCACCCTGGGCCTGACTGCCAATCCTCTCTCAAATCATGGGGGTGTTGGGGCCCTTCTTGGCCACGGATTCGGATCTCATTTCTGTGGTGGGATTTCTCCCGCTGCTCCAGGAATTCTTTTTTTACGCGTCTACCGATCAATTAGAGACATTGCACTATTGGTTGAAGAGATTCTCTCTCTTCTGATGGATTCTGTGAGAGAAATAGCTTGTAATGGTGCTCGAAAAGAGAGATCAGGGAGATTAAAGACAACCAATAATGCAAAAAGATATGGACAGATATCACTATCTTCAGCAATGACTCAAGTAAAGCTTGCAGCTTCCCTTGGAGCTTCACTAGTATGGCTATCAGGCGGTTTAGTATTAGTTCAATCTGTGATAAAAGAAACATTGCCTTCTTGGTTCATTTCAGTTCACAGGTCTGAGCAAGAGAAATGTTCAGAGGGGATAGTTTCCATGCTTGGTGGATATGCATTAGCTTACTTTGCAGTGTTATGTGGGGCTTTTGCTTGGGGCACTGATTCTTCATCATCTGCATCAAAGAGACGTCCCAAAATCCTTGGTGTCCACATGGAGTTTCTTGCAAGTGCTCTTGATGGAAAGATATCGCTAGGATGCGATTGGGCCACTTGGCGTGCCTACGTGACCGGGTTCGTGAGCCTAATGGTCGGTTGCACACCAAGCTGGGTTCTAGATGTAGATGTAGACGTATTGAAACGATTGAGTAACGGACTAAGGCAATGGAATGAAGAAGAGCTTGCTCTTGCATTGCTTGGACTTGGTGGGGTTGGTACCATTGGCGCAGCTGCTGAACTGATTATTGAAAGTGAAACGTAA 4344 44.27 MAVSVQNSLWDRVTELTKVAQQKGVDPLLWAIQLSSNLNSAGVALPSVELANLLVSHICWDNNEPVSWKFLEKALMLNIVPPILVLALLTTRFQSRVLWVFVCELSEPVLIIVIASLYRVISRRQFQPVAYRLYLELLRRHAFKLKSHIHGLKYKEVMASVDAVLRLSETFNLPANDPGTLVVEFIFSIVWQLLDATLVDEGLLELIVEEKSKWPTKPQEMELDGHNGYDDKWTEQRERLWNVNIELTIDIIGKFLQDAVTSRILHLACRNMPSHWADLIQRLQLLGENSSVLRNSKSLNSEIFLQFTSDTWTIFSQEFKQNSQQKFHPIRAFGSPAASASLCHRTRYSALWLPLDLVLEDAMDGYQVEATSAIEKITSLVKTLKAINGTSWHDTFLGLWIAALRLVQRERDPIEGPVPRIDTRLCLLLCITVLVIADLIEEEEESTTIDETEYVASNHWKEKKAPGKCRNELISSLQILGEYQSLLTPPQGVISACNQAAAKAMMFVSGISVSNAYFECINMKDMPMNSSGNMRHLIVEACIARNLLDTSAYFWRGYVNGCISQMPQSIPPQAPGWSAFMKGAPLNHIMINALTSTPASSSINTQLGGVRPCPFPLVVLTSRLGPKGQLREASLSASWACSPIGTGSALAHGLAELEKIFEIAVKGSDEEKISAATILCGASLIQGWNIQEHTVHYITRLLSPPVPTDYSGCESHLIGYAPMLNVLIVGIASIDCVQIFSLHGLVCSSLLPDIYILRHYSVTGLIRTIYFDVFFPTVNCCFCILLLVPQLACSLMPICEVFGSCVPNLDWTLTTGEEISAHAVFSNAFTLLLKLWRFNHPPLDHGVGDAPTVGSQLTPEYLLLVRNSHLVSGNVHKDRNKMRLSAVASSSSPQPIFVDSFPKLKVWYRQHQACIASTLSGHVHGNPVHQTVDGLLTMMFRRISGGNQPLTSVTSGSSSSSGPGNEDSSLRPKLPAWDIMEAVPFVIDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGLWKPVFMNGTDWPSPAENLSNVEEQIKKILAATGVDVPSLAAGGSSPATLPLPLAAFVSLTITYKIDRASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLQNCDAVVQLLKSCFTATLGLTANPLSNHGGVGALLGHGFGSHFCGGISPAAPGILFLRVYRSIRDIALLVEEILSLLMDSVREIACNGARKERSGRLKTTNNAKRYGQISLSSAMTQVKLAASLGASLVWLSGGLVLVQSVIKETLPSWFISVHRSEQEKCSEGIVSMLGGYALAYFAVLCGAFAWGTDSSSSASKRRPKILGVHMEFLASALDGKISLGCDWATWRAYVTGFVSLMVGCTPSWVLDVDVDVLKRLSNGLRQWNEEELALALLGLGGVGTIGAAAELIIESET 1447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21646307 21657944 - Lsi09G013630.1 Lsi09g01363 670976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01363 1447 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 8 747 - -
Lsi09g01363 1447 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 784 1444 - -
Lsi09g01363 1447 PANTHER OS07G0681500 PROTEIN 8 747 IPR039638 GO:0016592|GO:2000762
Lsi09g01363 1447 PANTHER OS07G0681500 PROTEIN 784 1444 IPR039638 GO:0016592|GO:2000762
Lsi09g01363 1447 MobiDBLite consensus disorder prediction 950 971 - -
Lsi09g01363 1447 MobiDBLite consensus disorder prediction 950 967 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01363 - - - csv:101216833 2400.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00909 Lsi-Chr5:16256733 Lsi09g01363 Lsi-Chr9:21646307 0 transposed
Lsi05g00908 Lsi-Chr5:16243172 Lsi09g01363 Lsi-Chr9:21646307 1.60E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g421 . . . Bda08g00388 . . . Bma05g00941 Cmo08g01146 Cmo17g00264 . . . . . . . . . . . . . . Cla06g00539 Cam06g0580 Cec06g0577 Cco06g0585 Clacu06g0567 Cmu06g0561 Cre06g1329 Cone14ag0817 . . . . . Chy11g01437 . Blo02g00645 . . . Bpe05g00752 . . . . . . Cma08g01175 Cma17g00277 Car08g01052 Car17g00252 Cpe12g00230 Cpe17g00120 Bhi12g01790 . . . . . . . . . . . . . Lsi09g01363 . . Cme11g01942
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000935 2 5 3 3 3 3 3 3 3 2 2 2 4 2 2 3 3 6 3 3 2 2 2 2 2 3 2 3 4 3 85