Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01365 ATGGGCCTATGCGGTTTGAAGCCGAGCATTGTCTCCTTCTCTTGCCTTTTAAAAACCCATATACAGTTTACTGTTTACGTTCTGTCCTTATCTTATGTGAGAGTGGTGCCTCCTAGAATTTCGTCTATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGACACTCATACTGGAGAGAAAGTTGCAATTAAGAAAATTAACGATATCTTTGAGCACGTCTCTGATGCAACTCGCATTCTTCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTTCTACCTCCATCTAGAAGGGAATTCAAGGACATTTATGTTGTGTTTGAGCTCATGGAATCTGATCTACATCAAGTTATCAAAGCAAATGATGATTTGACTCCAGAACATTATCAGTTCTTCCTGTACCAGCTTCTTCGAGGCTTGAAATACATACACACAGCAAATGTCTTCCACCGGGACCTAAAGCCCAAAAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTGGCACGAGTTGCTTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGCTGCATCTTTGCAGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTTGTCCACCAGTTAGATTTGATGACAGATTTTCTGGGAACCCCGAATGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATATTTAAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCGCTTGTTGGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGGGAGATTCTTGAGTATCATCCAAAGATGTTGAAGGAATTCTTAGATGGATCAGAACCTACTGGTTTCATGTATCCAAGTGCGGTTGACCATTTTAAGAAGCAATTTGCGTTCCTTGAGGAACACTATGGAAATGGTGCAACTGTCGCTCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAACATGGTGCAGAACTCGACCCAAGTTGCGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTTGGCTAGAGTTCCTATTCAAGTTCCTCAATCCATTCAAGCAGGCAATGGTGCAAGGCCGGGAAAAGTTGTCGGCTCTGTGTTGCGATACAACAACTGCGGAGCAACAGCAGCAGCAGTGGCACCAGAAGTTCTTGAACAGCGGAGGATGACCAGAAACCCTTCCATTCCACCACAGTACGCTGCTAATAACTGTTCATATCCAAGAAGAAACTCATCCTGTAAAAATGAAAGAACTGATGATGAAGCCATTGAAGGTCCAAACGGGTTGCAGCCAAAACCTCAGTATATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1800 42.67 MGLCGLKPSIVSFSCLLKTHIQFTVYVLSLSYVRVVPPRISSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNMVQNSTQVANDLSKCSIKEVERPQVDRTCNIPLARVPIQVPQSIQAGNGARPGKVVGSVLRYNNCGATAAAVAPEVLEQRRMTRNPSIPPQYAANNCSYPRRNSSCKNERTDDEAIEGPNGLQPKPQYIARKVAAAQGGPGNNWY 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21696552 21701395 + Lsi09G013650.1 Lsi09g01365 670978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01365 599 SUPERFAMILY Protein kinase-like (PK-like) 54 352 IPR011009 -
Lsi09g01365 599 ProSitePatterns MAP kinase signature. 92 195 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi09g01365 599 Gene3D Transferase(Phosphotransferase) domain 1 143 371 - -
Lsi09g01365 599 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 41 511 - -
Lsi09g01365 599 ProSitePatterns Protein kinases ATP-binding region signature. 63 87 IPR017441 GO:0005524
Lsi09g01365 599 MobiDBLite consensus disorder prediction 540 558 - -
Lsi09g01365 599 MobiDBLite consensus disorder prediction 540 578 - -
Lsi09g01365 599 ProSiteProfiles Protein kinase domain profile. 57 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01365 599 SMART serkin_6 57 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01365 599 Pfam Protein kinase domain 57 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01365 599 Gene3D Phosphorylase Kinase; domain 1 72 393 - -
Lsi09g01365 599 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 41 511 - -
Lsi09g01365 599 CDD STKc_TDY_MAPK 56 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00224 Lsi-Chr2:1876829 Lsi09g01365 Lsi-Chr9:21696552 0 dispersed
Lsi06g01294 Lsi-Chr6:23491733 Lsi09g01365 Lsi-Chr9:21696552 0 dispersed
Lsi08g01372 Lsi-Chr8:22013371 Lsi09g01365 Lsi-Chr9:21696552 1.33E-113 dispersed
Lsi09g00226 Lsi-Chr9:2368024 Lsi09g01365 Lsi-Chr9:21696552 2.74E-116 dispersed
Lsi09g01025 Lsi-Chr9:14562240 Lsi09g01365 Lsi-Chr9:21696552 0 dispersed
Lsi09g01365 Lsi-Chr9:21696552 Lsi11g01637 Lsi-Chr11:24708069 0 dispersed
Lsi10g01600 Lsi-Chr10:20492580 Lsi09g01365 Lsi-Chr9:21696552 6.56E-54 dispersed
Lsi09g01365 Lsi-Chr9:21696552 Lsi10g01541 Lsi-Chr10:19818071 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83913 PF00069 Pkinase 6.10E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01365 - K04371 csv:101216364 1102.81