Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01373 ATGCGAGGCCACGATTGGATCAATACCGTCCTTCCTGATGAGTTGATCGTTGAGATCTTCCGGTGTCTTGATTCGAAGCTCAGTCGCGATGCTTGTTCTCTCGTTTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGGACCACCCTACGAATCGGTGCAACTGGTAGCCCCGACCTCTTTGTTCAGCTCCTTGCTCGCCGTTTTGTCAATGTCAGAAATGTCCACATTGACGAGCGATTGGCGATTTCTTTTTCCCTTCATCCAGGAAGAAGACGTCGCAAAGAAGCCATGCGCTTGCCATACCATGCAACTGATAATACTGGGGCTGAAGGGGCGTTGGAGTCTTCGTGTCTGTCAGATGCTGGGCTATTTGCTCTCTCCGTAGGTTTTCCAAACCTCGAGAAACTAAGCTTAATTTGGTGCTCTAATATTTCAAGTCACGGTTTGACATCCCTAGCTGAGAAGTGTAGATTTTTGAAGTCACTGGATCTACAGGGCTGCTATGTTGGGGACCAAGGTGTAGCTGCAGTTGGGGAATTCTGTGAACAACTTGAAGATGTAAATCTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGCATTAGCCTGTGGTCGTGGGAAATCATTGAAAGCATTTGGTATTGCAGCTTGTGCCAAAATAACAGATGTCTCATTAGAAGCTGTGGGTATGCACTGCAAATATCTTGAGACCTTGTCGTTAGATTCAGAAGTTATCCACAACAAAGGGGTGCTTTCTGTAGCTCAAGGCTGCCCACATCTGAAAGTTTTGAAGCTACAATGTACAAATGTCACAGACGAAGCATTGGTAGCTGTAGGCTCCTTATGTCCTTCTCTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACTGACAAGGGTTTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATGGGCTTAGAAGCTGTTGCAGCTGGTTGTAAAGAACTAACACACCTTGAAGTGAATGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGCAAAATCTTGCCTCCAACTCACAGAATTGGCTTTGTTGTACTGCCAAAAGATTGCTAACTCTGGTCTTCTTGGAGTTGGTCAAAGTTGCAAGTTCATACAAGCGCTTCACTTGGTAGATTGCTCAAAAATTGGAGATGAAGCAATATGTGGCATAGCCAAAGGATGCAGAAATTTGAAGAAACTCCATATACGTCGATGTTATGAGATTGGGAATGCAGGAATCATAGCTATTGGCGAGAATTGCAAATTCCTCACGGATTTGAGCCTCAGATTTTGTGATAGGGTTGGTGATGAGGCTCTCATTGCCATTGGTAAGGGTTGTTCCCTACATCAGCTGAATGTTAGTGGGTGCCATCGTATCGGTGATGAGGGAATTGCAGCCATCGCTAGAGGTTGTCCCCAATTGAGTTACTTGGATGTAAGCGTTCTCGAGAACTTGGGTGATATGGCAATGGCTGAGTTAGGGGAAGGCTGTCCCTTGCTTAAAGACGTGGTATTGTCTCACTGTCACCAGATAACCGATGCGGGTATAATGCATTTAGTGAAGTGGTGCACCATGCTCGAATCCTGTCACATGGTCTACTGTCCCGGCATTTCCGCAGCTGGGGTCGCCACTGTCGTTTCTAGCTGCCCCAGCATAAAGAAAATTCTTGTCGAGAAATGGAAGACAAGCACCGCTTCCCGGCCATCATCTGCATCCATCTTTCTAAGCCATTCTTCAAACCGGTACTTATTGAGCATCCGTCGCGGAGAAGTAGCCATGCCTGATGGTTGCAGCATCAGAGCCATTTGGATCTTCAGCAACTTCGACGCTGTTATTTTCTCCAGGAGGTTTCCAGTGGCAGAGAGGCGGTGGCGAACTGCATGCAAGACCGAGAATGATAGATGTACTTCAGACGACCTAACATCTAGCGTGTCTCCAGTACTTCCTAATGATTCGGAGTTAGCTGCTGCATTTGTTGAGAGAAAGAAGAGGTTAGTTGAGATTGTTACCACTTTTCTTGTTCAAAAACTCGCTAGGAAGTTATTACTTCCTTCCTTTCTACTAACACTTAAATGTAATATCAATCTGTCACCTGCAGTAGATTTGCTGGTGACCGGCGTCACTGTACTGGTGCTATGGTTTCATGACTTAAAAAAAAAAGGGATTTGTGGCCATTTAAAGTTCTTCTCAAGTTTTGATGCTCAAATAGAGGAATCTGCCCGTGGGTTTGGCATTCGCGTTATTCAGTCATCTAAGGGAAGTGATTCTTGGGTTGATGACCCTATCACACGACATATCATTGGACTTCATGTGAAGAAAGAAGAAGGGAGCAGTATCTTTATATGGCCCCTAATATTGAACATAAAGAGTCATTATTCCATTCTTGTGTTGCCGTTAGTTGAACCACAGCACATAAAACATTATGCAAGTTTGTGCAGAAGATCTGATTGTGGAAGTGCTATTGGAGCAGAAAGTTCCTTATCTTCCCTCCTGCTTGATCTTCCTTCCATCACAGGGGCATTCATGGTTGCACTTGCTATTGGTGATGTAATCACTGGTGATGTGGTTGAACCTGATGTCCTCGTCAGTGCATCTCCATCTGTGGGAGGTTTATTGGATTCATTAACAGGCAGCATAGGAATATCAGGAATCTCTGCTAGGGCAAAACCTGTAGCTTCTCCCAGCACATCTGCCACTCCTTCTAGCAATACTGTGACAGGAGCACTTAATTCAGATGTCCCTAGGCCTTTGGATAAAGATGCACTTAGATCTTTCATAAGCAGTTCAATGCCCTTTGGTTGGTTCATGTATCTGACTGGCCTCCTTTCTTTTGGTGTTAATTATATGCTAGGAACACCATTGGATCTGAGCTATACCAATATATTTTCTATCAAAGTAAATGGTTTTTCTTCATCAGATCCGCCTCCTGCTGATGTTAAACAACCAGCATGGAAGCCATATCTGTATAAAGGGAAGCAGAGAGTGATACTTACCATCCATGAGATCATAAATGCAGCTATGTATGACAGGGATGAGATTCCAGATAAAATGTCAGTTTCTGGTCAAATAAATTGTCGAGCTGAATTAGAAGGGTTGCCTGATGTTTCCTTCCCCTTAGCAGGGTCGAATAAGGCTCGTATTGAGGGCTTATCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAGGCTGTGATGTTTTCTCCCCCACTTGGTAATTTTGTTTTAATGCGTTATCAGGCAATATGTGCTTCTGGGCCTCCTGTTAAAGGATTTTACCAATTATCCATGGTCTCTGAGGACAAAGGTGCTTTTTTGTTCAAGTTGTGTTTGATGGAAGGTTATAAAGCTCCTCTGTGTATGGAATTCTGTACCGTGACTATGCCTTTCCCTAGAAGAAGGATTGTATCTTTTGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAACATTCAGTTGAGTGGAAAATTTTAGCAAGTGGACGAGGGCTGTTGGGAAAAAGTATTGAGGCAACTTTTCCTGGAACAATTAGGTTTGCACCCTGGCAAATCCAAAGCTTGCATTCTTCAAGTTCTGTCACTGCTAGTGTAGAAGAGGTAGATAGTGATGTCGAGGCTGAAAGTGCAAGCAATGTGGTCAACATTGAGGAATTTTTAATGGAGAAAATGAGCAAGGATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCGTATAATTATGCCAAGGTATCGTTCAAGATTTTAGGGGCATCATTATCAGGAATATCTGTCGATCCTAAATCTGTTAGCATTTATCCAGCTGTTAAAGCTCCAGTTGAATTTTCAACCCAGGTAACTTCGGGGGATTACATTTTGTGGAACACCTTGGATAAGTGCCCGTCTGTTGCCTCAGAAAAAATATAG 3987 43.97 MRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISFSLHPGRRRRKEAMRLPYHATDNTGAEGALESSCLSDAGLFALSVGFPNLEKLSLIWCSNISSHGLTSLAEKCRFLKSLDLQGCYVGDQGVAAVGEFCEQLEDVNLRFCEGLTDTGLVALACGRGKSLKAFGIAACAKITDVSLEAVGMHCKYLETLSLDSEVIHNKGVLSVAQGCPHLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYFLSDMGLEAVAAGCKELTHLEVNGCHNIGTMGLESIAKSCLQLTELALLYCQKIANSGLLGVGQSCKFIQALHLVDCSKIGDEAICGIAKGCRNLKKLHIRRCYEIGNAGIIAIGENCKFLTDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDEGIAAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDVVLSHCHQITDAGIMHLVKWCTMLESCHMVYCPGISAAGVATVVSSCPSIKKILVEKWKTSTASRPSSASIFLSHSSNRYLLSIRRGEVAMPDGCSIRAIWIFSNFDAVIFSRRFPVAERRWRTACKTENDRCTSDDLTSSVSPVLPNDSELAAAFVERKKRLVEIVTTFLVQKLARKLLLPSFLLTLKCNINLSPAVDLLVTGVTVLVLWFHDLKKKGICGHLKFFSSFDAQIEESARGFGIRVIQSSKGSDSWVDDPITRHIIGLHVKKEEGSSIFIWPLILNIKSHYSILVLPLVEPQHIKHYASLCRRSDCGSAIGAESSLSSLLLDLPSITGAFMVALAIGDVITGDVVEPDVLVSASPSVGGLLDSLTGSIGISGISARAKPVASPSTSATPSSNTVTGALNSDVPRPLDKDALRSFISSSMPFGWFMYLTGLLSFGVNYMLGTPLDLSYTNIFSIKVNGFSSSDPPPADVKQPAWKPYLYKGKQRVILTIHEIINAAMYDRDEIPDKMSVSGQINCRAELEGLPDVSFPLAGSNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAICASGPPVKGFYQLSMVSEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKILASGRGLLGKSIEATFPGTIRFAPWQIQSLHSSSSVTASVEEVDSDVEAESASNVVNIEEFLMEKMSKDLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVSIYPAVKAPVEFSTQVTSGDYILWNTLDKCPSVASEKI 1328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21744192 21758255 + Lsi09G013730.1 Lsi09g01373 670986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01373 1328 MobiDBLite consensus disorder prediction 911 931 - -
Lsi09g01373 1328 Gene3D Ribonuclease Inhibitor 352 594 IPR032675 -
Lsi09g01373 1328 CDD AP_MuD_MHD 1003 1321 - -
Lsi09g01373 1328 Gene3D Mu homology domain, subdomain B 1004 1132 - -
Lsi09g01373 1328 SUPERFAMILY F-box domain 9 42 IPR036047 GO:0005515
Lsi09g01373 1328 Pfam Leucine Rich repeat 156 177 IPR001611 GO:0005515
Lsi09g01373 1328 Pfam Leucine Rich repeat 467 489 IPR001611 GO:0005515
Lsi09g01373 1328 Pfam Leucine Rich repeat 441 463 IPR001611 GO:0005515
Lsi09g01373 1328 Pfam Leucine Rich repeat 415 437 IPR001611 GO:0005515
Lsi09g01373 1328 Pfam Leucine Rich repeat 518 540 IPR001611 GO:0005515
Lsi09g01373 1328 Pfam Leucine Rich repeat 260 280 IPR001611 GO:0005515
Lsi09g01373 1328 Pfam Leucine Rich repeat 185 205 IPR001611 GO:0005515
Lsi09g01373 1328 SMART LRR_CC_2 518 543 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 260 284 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 182 207 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 337 362 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 389 414 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 285 310 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 157 181 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 235 259 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 311 336 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 492 517 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 544 569 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 467 491 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 441 466 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 363 388 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 209 234 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 415 440 IPR006553 -
Lsi09g01373 1328 SMART LRR_CC_2 131 156 IPR006553 -
Lsi09g01373 1328 Pfam F-box 11 48 IPR041567 -
Lsi09g01373 1328 Gene3D Ribonuclease Inhibitor 113 351 IPR032675 -
Lsi09g01373 1328 Pfam Adaptor complexes medium subunit family 1004 1297 IPR028565 -
Lsi09g01373 1328 SUPERFAMILY RNI-like 234 575 - -
Lsi09g01373 1328 SMART LRR_RI_2 466 494 - -
Lsi09g01373 1328 SMART LRR_RI_2 260 290 - -
Lsi09g01373 1328 SMART LRR_RI_2 157 187 - -
Lsi09g01373 1328 SUPERFAMILY RNI-like 118 258 - -
Lsi09g01373 1328 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 1003 1314 IPR036168 -
Lsi09g01373 1328 Gene3D - 7 47 - -
Lsi09g01373 1328 ProSiteProfiles Mu homology domain (MHD) profile. 1013 1276 IPR028565 -
Lsi09g01373 1328 PANTHER AP-5 COMPLEX SUBUNIT MU-1 618 685 IPR039591 -
Lsi09g01373 1328 PANTHER AP-5 COMPLEX SUBUNIT MU-1 753 1326 IPR039591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01373 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1130.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02681 Lsi-Chr2:33281732 Lsi09g01373 Lsi-Chr9:21744192 1.27E-09 dispersed
Lsi03g01355 Lsi-Chr3:24465342 Lsi09g01373 Lsi-Chr9:21744192 2.57E-16 dispersed
Lsi04g00787 Lsi-Chr4:7396872 Lsi09g01373 Lsi-Chr9:21744192 4.08E-23 dispersed
Lsi04g01388 Lsi-Chr4:21675063 Lsi09g01373 Lsi-Chr9:21744192 3.52E-07 dispersed
Lsi04g02132 Lsi-Chr4:28441924 Lsi09g01373 Lsi-Chr9:21744192 1.18E-20 dispersed
Lsi05g00458 Lsi-Chr5:5871743 Lsi09g01373 Lsi-Chr9:21744192 5.30E-08 dispersed
Lsi06g00331 Lsi-Chr6:3679483 Lsi09g01373 Lsi-Chr9:21744192 4.35E-09 dispersed
Lsi07g00097 Lsi-Chr7:1101820 Lsi09g01373 Lsi-Chr9:21744192 1.88E-13 dispersed
Lsi07g00098 Lsi-Chr7:1106125 Lsi09g01373 Lsi-Chr9:21744192 1.25E-09 dispersed
Lsi08g00510 Lsi-Chr8:13020976 Lsi09g01373 Lsi-Chr9:21744192 1.68E-12 dispersed
Lsi09g01373 Lsi-Chr9:21744192 Lsi06g00089 Lsi-Chr6:897490 2.33E-17 dispersed
Lsi10g00186 Lsi-Chr10:3090821 Lsi09g01373 Lsi-Chr9:21744192 6.61E-13 dispersed
Lsi11g00691 Lsi-Chr11:7286792 Lsi09g01373 Lsi-Chr9:21744192 4.54E-07 dispersed
Lsi09g01373 Lsi-Chr9:21744192 Lsi08g01205 Lsi-Chr8:20592940 1.12E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g404 . . Bda03g01246 . . . . . Cmo08g01155 Cmo17g00272 . . . . . . . . . . . . . . Cla06g00530 Cam06g0571 . Cco06g0577 Clacu06g0559 Cmu06g0553 Cre06g1321 . . Cone7ag0198 Cone4ag0192 . . Chy11g01445 . . . . . . . . . . . . Cma08g01184 Cma17g00284 Car08g01061 Car17g00260 . Cpe17g00112 Bhi12g01779 . . . . . . . . . . . . . Lsi09g01373 . . Cme11g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007087 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35