Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01376 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCGTTGGTTGGTGAATCCCAAGACTTTCGACAAGGGGTTCCTTATTGTCTTCAAGATAAGAACACTGTGATAGAGAAATCATTGGAGTTGATTCCTGTTGCTTCTCACAACTATCATTTGGAATACTTGGTACTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACAAGTATTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAACTTTGTGAAAGATAGACTAATAGAAAAGCTATGCAATGATCCCACATTGTTAGATGATCCTGTACAAGCTTATAATTCAGCATTTTTGTCTACAAATGATGAATTGCATACAAGTGAGATTGATGATTCCATGAGTGGAACAACTGCAATTACAGTTCTTGTTGTTGGGGATACCCTTTACGTGGCCAATGTTGGGGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGAATTCTGTTCTTGCTAAGGACTTGTCAAATGATCAAACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGAGCTAGAGTTCTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGCGATGAAGAAAGTCAGGGCGGCGATCCGCCTCGACTGTGGGTTCAAAATGGATTGTATCCTGGAACTGCATTTACTAGGAGCATTGGTGACAGTACTGCAGAGAAGATTGGTGTAAATGCCGTTCCTGAGGTTTTAGTTCTTCAGCTTAACCCCAATCATCGTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGCACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGAACCGATGATATAACGATCATTGTTGTTCAAATCAAAGGCTTGTCTAATTCAGGTGCTGAGAATCCTTCCAGCACCGTGCTGGAGACTGCTTCTTTAAGAATCGATTTCTCAGATCTACCTACCGAACCGAACTCTCAACAAGTTGCTGTGACAAATCGGAACCCAGCGATCGTGTTGAAACAAATTTCCATTTTCCAGCTTAGCATTGGACCAACTAAGTTGATAGAGACATGGAAAAAAATGGATGGATTGTTCTATTGA 1263 40.86 MGCIHTKCCCRYPKSLVGESQDFRQGVPYCLQDKNTVIEKSLELIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTSIQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFLSTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNSVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAVPEVLVLQLNPNHRFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIVVQIKGLSNSGAENPSSTVLETASLRIDFSDLPTEPNSQQVAVTNRNPAIVLKQISIFQLSIGPTKLIETWKKMDGLFY 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21780871 21785078 + Lsi09G013760.1 Lsi09g01376 670989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01376 420 Gene3D - 49 347 IPR036457 -
Lsi09g01376 420 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Lsi09g01376 420 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 39 361 - -
Lsi09g01376 420 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 39 361 - -
Lsi09g01376 420 CDD PP2Cc 71 345 IPR001932 -
Lsi09g01376 420 Pfam Protein phosphatase 2C 84 324 IPR001932 -
Lsi09g01376 420 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Lsi09g01376 420 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Lsi09g01376 420 SMART PP2C_4 56 343 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01472 Lsi09g01376 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01376 Lsi-Chr9:21780871 Lsi04g01437 Lsi-Chr4:22091024 1.47E-28 dispersed
Lsi05g01472 Lsi-Chr5:22555534 Lsi09g01376 Lsi-Chr9:21780871 5.24E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01376 - - csv:101217134 777.704