Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01380 ATGCATAGGAGCCGGTTGTCTTATGAGCAGTTCAGTTCATTCTTAACCAATGTTAAAGAGTTGAATGCCCACAAGCAAACAAAAGAGGAGACCCTTCGGAAGGCTGATGAGATATTTGGCCCGGATAACAAGGACCTGCTCAAAATTGCTTTCCGAATCCTTGTCTCTTCATCGATTCCAATAAACTTCATGGAAAATGATCAAGAATCTCCTGCTTCTTCTTCCAGTTGTAAGACAAGCGAGCGAACGTTGCAACGATCGAAGATGTTGGAAGTTTCAATCGTAGAGAAATTGGAACAGCAAGACTCTGCGGATATGGCTGGATGCGGTCCGACTGAGATTCAACCGTCCGAGAGTTTCTGTACTTGGCAGGATGATTTTGCGAAGCTATTCTTAGTTCTTTGTCGGTTTATATTTGATGTAATAGTTGTGGGGTGGGGATTGGGAACTTTGACATATAGGAATGGTCCGGCTAAAATGAAGAGATTTTGCCATGGAGCTTTTAGGCTGTTTGTGCTATCAAATAGTTGCTTACGTGGAAATTTGTTGAACAGCAATGATTCAAGCGATATTGATAGTCAAAATCAATTAAAAGATGAGATAAATCAAGCTGTGGGGACTCCCAATTTAGGGAACAGATCAAGACCGCGTGGATTCTCTGACTCTTTTGCTTCTCATGAGTTGAGATTGTTAGATTTGGAAGATGAAACCAAAAATGAGTCATCTCCAAGAGGGGTGCTCGAGGACTGCTCAAGAAGTTTAGATTCTGAAACAACTACTTCCCGGGCCAGCACTTCCGATTGGGAAGGTCATCCGGACTCGAGATTTCCTAGTCATTGGAGAGGGTTCTTTCGTTTACTGAAGAAAGGACCTCAAATGCGATTTCAGACATTTCCTCCTCTTAAAGCTGTTCCAAAACTCACCAGAAGAAAGAGCAAAAGAATTAGAGAGGATATGCTTCCTGTAGTATCACCAGTGATGGACACTTCTATAGAGACCGAGTTTTGCTATTTCAGATCTTCTTGGAAGAATTTCACACTTTCAGAGCTGCAAGATGCAAGCGATAACTTCAGCCAAGAAAACTTGATTGGTGAGGGTGGTTATTCTGAAGTTTACAAGGGTCAGCTGGAAGATGGGCGACTTGTCGCGATCAAGCGGCTTAATAGAGGTAGCCAAGAAGAGATGACTGCAGACTTCTTGTCTGAGCTCGGAATTATTGTTCATGTTGATCATCCTAATATCGCGAGTGTAATTGGGTACGGCGTTGAAGGCGGAATGCACCTTATACTTCATTTATCACCCCATGGGAGCCTGGCATCCATACTTTATGGGCCAAAGGAGAGATTGGATTGGTCAACCAGGTATAAGATTGCTCTAGGAATTGCTGAAGGCCTTCTGTATCTTCATGAAGGCTGCCAAAGAAGAATAATCCACAGAGACATTAAGGCCGCTAATATTTTGCTCAGAGATGATTTTGAGCCTCAGATATCTGACTTCGGGCTTGCAAAGTGGCTCCCAGATCAATGGACTCACCATACTGTGTCAAAGTTTGAAGGCACATTCGGGTACCTTCCTCCTGAGTTCTTTATGCATGGCATTGTTGATGAAAAAACTGATGTCTATGCCTATGGTGTACTTTTATTGGAACTCATTACCGGACGACGAGCACTGGATAGCACACAGCAAAGCCTTGTGATGTGGGCTAAACCTCTACTTTCTAAACAGAATCTCAAGGAACTTGTTGATTCATCTCTTGTTGACGCATTTGACACCGAACAAATGAAACGTATGATATCAATAGCTTCAATGTGCATAAATCAATCTTCAATTCAGCGGCCGGAAATGAGTGAGTTCATATTCGTATCTTTTGTCCCATTGAAACTCAAGAAGATACCTCTTGTTTTCCTTGTCCTCATCCCTGACACAATTCTCGAGATTAGGACAAAATACAAATCCTTCCATTGTTGGAAAACCTTTGGTACCTGTAGTTGTTGTACATTAGTCCTCCATATCCATATTTTTATCCTAGTGAAACTTAAAAAGACCTCTCTTTTTCCCAGTCCTCATCTACAATCCCAACTGTTTTCCCACAACATATATTATATGCAGATTGTTCAGATTCTGAAAGGGGAAGGAGTTGGTAATTTGGAGCTTGTAAAACGACAGATGTCTAAACTTCAAAGGACATACTCTGAGGAGCTTTTGGATGCAGAAGAATACAATTCTACCAAATATTTAAGTGATATTGATCGACATTTGGAGGTTGTTTTAGGAACCTGTCATATTGATGTTTAG 2295 41.57 MHRSRLSYEQFSSFLTNVKELNAHKQTKEETLRKADEIFGPDNKDLLKIAFRILVSSSIPINFMENDQESPASSSSCKTSERTLQRSKMLEVSIVEKLEQQDSADMAGCGPTEIQPSESFCTWQDDFAKLFLVLCRFIFDVIVVGWGLGTLTYRNGPAKMKRFCHGAFRLFVLSNSCLRGNLLNSNDSSDIDSQNQLKDEINQAVGTPNLGNRSRPRGFSDSFASHELRLLDLEDETKNESSPRGVLEDCSRSLDSETTTSRASTSDWEGHPDSRFPSHWRGFFRLLKKGPQMRFQTFPPLKAVPKLTRRKSKRIREDMLPVVSPVMDTSIETEFCYFRSSWKNFTLSELQDASDNFSQENLIGEGGYSEVYKGQLEDGRLVAIKRLNRGSQEEMTADFLSELGIIVHVDHPNIASVIGYGVEGGMHLILHLSPHGSLASILYGPKERLDWSTRYKIALGIAEGLLYLHEGCQRRIIHRDIKAANILLRDDFEPQISDFGLAKWLPDQWTHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRRALDSTQQSLVMWAKPLLSKQNLKELVDSSLVDAFDTEQMKRMISIASMCINQSSIQRPEMSEFIFVSFVPLKLKKIPLVFLVLIPDTILEIRTKYKSFHCWKTFGTCSCCTLVLHIHIFILVKLKKTSLFPSPHLQSQLFSHNIYYMQIVQILKGEGVGNLELVKRQMSKLQRTYSEELLDAEEYNSTKYLSDIDRHLEVVLGTCHIDV 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21820796 21830825 + Lsi09G013800.1 Lsi09g01380 670993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01380 764 MobiDBLite consensus disorder prediction 234 273 - -
Lsi09g01380 764 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 209 617 - -
Lsi09g01380 764 MobiDBLite consensus disorder prediction 252 267 - -
Lsi09g01380 764 SMART serkin_6 357 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01380 764 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Lsi09g01380 764 SUPERFAMILY Protein kinase-like (PK-like) 337 620 IPR011009 -
Lsi09g01380 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Lsi09g01380 764 Pfam Protein kinase domain 358 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01380 764 ProSiteProfiles Protein kinase domain profile. 357 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01380 764 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Lsi09g01380 764 PANTHER OS08G0249100 PROTEIN 209 617 - -
Lsi09g01380 764 Gene3D Transferase(Phosphotransferase) domain 1 434 622 - -
Lsi09g01380 764 Coils Coil 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01380 - - - csv:101216575 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00788 Lsi-Chr5:11422414 Lsi09g01380 Lsi-Chr9:21820796 3.75E-119 dispersed
Lsi09g01380 Lsi-Chr9:21820796 Lsi11g00501 Lsi-Chr11:5305734 5.03E-09 dispersed
Lsi10g01523 Lsi-Chr10:19567400 Lsi09g01380 Lsi-Chr9:21820796 7.37E-16 dispersed
Lsi09g01380 Lsi-Chr9:21820796 Lsi06g00871 Lsi-Chr6:18218127 3.06E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83914 PF00069 Pkinase 5.60E-41 CL0016 Lsi PK