Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01381 ATGTTCAAATTTCGTAATCTGTTATTCATCTTCTTGATTTTGATCTCATCGGTTGTTCGGGAATCAACTTGTTCGTATGCTGGTTCGGCTAGCTCCACCGTAGATCCTAGTAAAGTGAAGCAGATTTCATGGAAACCGAGAGCTTTTGTATATGAAGGTTTTCTCACGGACCTAGAATGCGACCACCTGGTTTCTATAGCGAGATCCGAGCTAAAGAGATCTGAGGTTGCTGATAATGATTCAGGAAAGAGCAAGCTCAGTACTGTTCGAACGAGTTCAGGAATGTTCATTTCTAAAAGCAAGGATCCTATTGTTTCTGGCATAGAGGACAAAATTTCTGCATGGACTTTTCTTCCAAAAGAAAATGGGGAGGATATTCAGGTATTGAGATATGAGCATGGGCAGAAATATGAGTCACATTATGATTACTTTGTTGACAAGGTGAATATTGCCTGGGGAGGACATCGTTTAGCTACAGTCCTTATGTATCTCTCTGATGTGACTAAAGGCGGTGAAACAGTTTTCCCCTTGGCAGAGAAATCTCCCCACCGGAGGGCTGCTGAAACAGATGAGGATCTCTCAGAGTGTGCAAGGAAAGGAATTGCAGTGAAACCAAAGAAAGGCGATGCCCTTCTTTTCTTTAGTCTTGAACCAAATGCTATCCCAGACACAAACAGTCTCCATGGAGGTTGCCCTGTCCTTGAAGGAGAAAAATGGTCAGCAACAAAGTGGATTCACGTAGATTCCTTCAGCAAAAACTTAGGAAACATTGGGAACTGTACTGATCTAAATGAAAGTTGCGGAGCTGCAGGATCTGTTGATCTCAACAATACACTCGAAATTTCGATACCTTTAGACGTTATTAGTGGAATGGAAAGCACTACAACATTGATTGTGAAGCTATCCGAAGCACGGATGGATGAGGCAGTAGCCGTTGGTGCAAGCATGGAGGTGGGGTTGATGCAGAGACAATGGGTTGAGTACACAAGGTCGTTATTCTTGGAGGATTTCTTGGACAGTCAGTTTATAGAGCTGCAGAAACTGCAAGATGAGGGCAACCCAGATTTCATTGTTGAAGTGGTGTCTCTTTTCTTCGAGGATTCTGAGAGGCTTCTCAATGATCTCACCATAGCATTTGATCAACCTGATGTGGACTTCCAAAAGATTGATGGCCATGTTCACCAGCTTAAAGGAAGCAGTTCGAGCATAGGTGCACAGAGAGTTAAAAATGTCTGTATTGCCATGCGCAGCTTCTGTGAGGAACAGAACATGGATGGGTGCCTGAGATGTCTGCAACAATTAAAGCAAGAGACCTGCCTTGTGAAAAACAAGCTTGAGAATCTATTCAGGATGGAGCAACAAATTGTGGCTGCTGGTGGGTCAATCCCTGCAACAGAATTGATATTCTAA 1410 43.26 MFKFRNLLFIFLILISSVVRESTCSYAGSASSTVDPSKVKQISWKPRAFVYEGFLTDLECDHLVSIARSELKRSEVADNDSGKSKLSTVRTSSGMFISKSKDPIVSGIEDKISAWTFLPKENGEDIQVLRYEHGQKYESHYDYFVDKVNIAWGGHRLATVLMYLSDVTKGGETVFPLAEKSPHRRAAETDEDLSECARKGIAVKPKKGDALLFFSLEPNAIPDTNSLHGGCPVLEGEKWSATKWIHVDSFSKNLGNIGNCTDLNESCGAAGSVDLNNTLEISIPLDVISGMESTTTLIVKLSEARMDEAVAVGASMEVGLMQRQWVEYTRSLFLEDFLDSQFIELQKLQDEGNPDFIVEVVSLFFEDSERLLNDLTIAFDQPDVDFQKIDGHVHQLKGSSSSIGAQRVKNVCIAMRSFCEEQNMDGCLRCLQQLKQETCLVKNKLENLFRMEQQIVAAGGSIPATELIF 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21833818 21845953 + Lsi09G013810.1 Lsi09g01381 670994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01381 469 SMART p4hc 46 246 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lsi09g01381 469 Gene3D HPT domain 312 469 IPR036641 GO:0000160
Lsi09g01381 469 Gene3D q2cbj1_9rhob like domain 38 247 - -
Lsi09g01381 469 Pfam 2OG-Fe(II) oxygenase superfamily 126 246 IPR044862 -
Lsi09g01381 469 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 8 272 IPR045054 -
Lsi09g01381 469 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 320 455 IPR036641 GO:0000160
Lsi09g01381 469 CDD HPT 359 437 IPR008207 GO:0000160
Lsi09g01381 469 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 122 247 IPR005123 -
Lsi09g01381 469 PANTHER PROLYL 4-HYDROXYLASE SUBUNIT ALPHA-LIKE PROTEIN 8 272 - -
Lsi09g01381 469 Pfam Hpt domain 359 437 IPR008207 GO:0000160
Lsi09g01381 469 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 353 458 IPR008207 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01381 K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] - csv:101218235 516.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02988 Lsi-Chr2:35969967 Lsi09g01381 Lsi-Chr9:21833818 2.78E-35 dispersed
Lsi03g01445 Lsi-Chr3:25379044 Lsi09g01381 Lsi-Chr9:21833818 8.80E-95 dispersed
Lsi08g01070 Lsi-Chr8:19273410 Lsi09g01381 Lsi-Chr9:21833818 3.97E-13 dispersed
Lsi09g01381 Lsi-Chr9:21833818 Lsi02g01508 Lsi-Chr2:20988826 1.08E-60 dispersed
Lsi11g00229 Lsi-Chr11:2294309 Lsi09g01381 Lsi-Chr9:21833818 1.68E-13 dispersed
Lsi01g00564 Lsi-Chr1:4514010 Lsi09g01381 Lsi-Chr9:21833818 1.22E-80 transposed
Lsi01g00920 Lsi-Chr1:7432084 Lsi09g01381 Lsi-Chr9:21833818 6.61E-37 transposed
Lsi05g01486 Lsi-Chr5:22640816 Lsi09g01381 Lsi-Chr9:21833818 7.10E-83 transposed
Lsi05g01488 Lsi-Chr5:22646424 Lsi09g01381 Lsi-Chr9:21833818 6.84E-33 transposed
Lsi06g00164 Lsi-Chr6:1766959 Lsi09g01381 Lsi-Chr9:21833818 4.42E-55 transposed
Lsi07g00085 Lsi-Chr7:926208 Lsi09g01381 Lsi-Chr9:21833818 2.56E-23 transposed
Lsi07g00455 Lsi-Chr7:4842320 Lsi09g01381 Lsi-Chr9:21833818 3.54E-39 transposed
Lsi10g01176 Lsi-Chr10:16021765 Lsi09g01381 Lsi-Chr9:21833818 3.19E-09 transposed
Lsi11g00414 Lsi-Chr11:4312187 Lsi09g01381 Lsi-Chr9:21833818 4.29E-75 transposed
Lsi05g01485 Lsi-Chr5:22638924 Lsi09g01381 Lsi-Chr9:21833818 3.14E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g388 . . . . . Bpe14g01159 . . Cmo08g01164 Cmo17g00280 Cma06g01452 . Car06g01254 Car14g01488 . Cpe08g00223 Cpe03g01398 . . . . . . . Cla06g00522 Cam06g0561 Cec06g0561 Cco06g0568 Clacu06g0549 Cmu06g0545 Cre06g1314 Cone14ag0800 . . . . . Chy11g01453 Cme06g00676 Blo02g00569 . Bda11g00549 . . Bpe13g00640 . Bma06g01526 . Cmo06g01453 Cmo14g01698 . Cma17g00292 Car08g01069 Car17g00269 Cpe12g00244 Cpe17g00106 Bhi12g01760 . . . . . . Cla05g00602 Cam05g0663 Cec05g0672 Cco05g0667 Clacu05g0657 Cmu05g0626 Cre05g0695 Lsi09g01381 Csa03g01401 Chy06g00644 Cme11g01958
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002376 1 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 1 1 2 2 2 1 3 2 1 62