Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01383 ATGGCCATTGGGCAGCACAAAGATAGTGAAAATGGTGAAAACAATGGCTTACAAGCCTTGGAAGAATCTCTTCTTTTCAGTTCTTCAGAATGTGAAGGTTGTGAAAAAGCTATGAAAAGAGAATCCTCCTTATGGATGGTCTTGCTCTGCACATTGGTTGCTGTTTGTGGTTCTTTTGAATTCGGATCGTGTGTGGGCTATTCAGCACCAACTCAATCTGTGATCAGGGAAGAACTTCATCTTTCTCTGCCTCAGGGAGCTTTATCCCTAGACTTTGGAAGAGTGCTCACAGGCTATGGGATTGGAGTTTTCTCCTATGTGGTTCCTATATTCATAGCGGAAATCGCACCGAAGAATCTACGAGGAGGCCTCACGACACTCAATCAGCTTATGATTGTTACAGGGGCATCCATTTCTTTCTTATTAGGGACAGTGATAACATGGAGAAATCTTGCTTTAACTGGAATCATTCCATGTGTTTTTCTGATTGTCGGTCTGTGGTTCGTTCCAGAGTCTCCTCGATGGCTGCGACTTCGTGGAAAAGATGCTGATATCTCTGATGAAGCTACTGAAATCAAAGACTACAATGAAACTCTGCAAAGTCTTCCAAAAGCCAGACTCCTGGATTTGTTCCAAAGCAAATATAGTCGTCCTGTTATCGCCCCTCATCAAGAAAAACAGGAACTATTTCTTACGCTTGTCTTCAGGTACTTTGATTGCTGA 723 42.74 MAIGQHKDSENGENNGLQALEESLLFSSSECEGCEKAMKRESSLWMVLLCTLVAVCGSFEFGSCVGYSAPTQSVIREELHLSLPQGALSLDFGRVLTGYGIGVFSYVVPIFIAEIAPKNLRGGLTTLNQLMIVTGASISFLLGTVITWRNLALTGIIPCVFLIVGLWFVPESPRWLRLRGKDADISDEATEIKDYNETLQSLPKARLLDLFQSKYSRPVIAPHQEKQELFLTLVFRYFDC 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21855912 21859326 - Lsi09G013830.1 Lsi09g01383 670996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01383 240 Gene3D MFS general substrate transporter like domains 44 223 IPR036259 -
Lsi09g01383 240 Pfam Sugar (and other) transporter 91 183 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi09g01383 240 PANTHER - 37 85 - -
Lsi09g01383 240 PANTHER - 83 220 - -
Lsi09g01383 240 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 240 IPR020846 GO:0022857
Lsi09g01383 240 PANTHER SUGAR TRANSPORTER ERD6-LIKE 16 37 85 - -
Lsi09g01383 240 PANTHER SUGAR TRANSPORTER ERD6-LIKE 16 83 220 - -
Lsi09g01383 240 SUPERFAMILY MFS general substrate transporter 44 215 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01383 K03444 ERD6, ESL1; MFS transporter, SP family, ERD6-like sugar transporter - csv:101214686 359.377
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01489 Lsi09g01383 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00915 Lsi-Chr5:16310235 Lsi09g01383 Lsi-Chr9:21855912 6.46E-09 dispersed
Lsi09g01383 Lsi-Chr9:21855912 Lsi04g01668 Lsi-Chr4:24106258 7.88E-41 dispersed
Lsi05g01489 Lsi-Chr5:22676416 Lsi09g01383 Lsi-Chr9:21855912 8.34E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g385 . . . . . . . . . Cmo17g00282 . Cma14g01652 . . . . Cpe03g01396 . . . . . . . Cla06g00520 Cam06g0559 Cec06g0559 Cco06g0566 Clacu06g0547 Cmu06g0543 Cre06g1312 . . . . Lsi05g01489 . Chy11g01455 Cme06g00678 . . . . . . . . . . Cmo14g01696 . . . Car17g00270 Cpe12g00246 . Bhi12g01756 . . . . . . Cla05g00604 Cam05g0665 Cec05g0674 Cco05g0669 Clacu05g0659 Cmu05g0628 Cre05g0697 Lsi09g01383 Csa03g01403 Chy06g00646 Cme11g01960
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000288 3 7 2 3 2 5 5 5 5 5 4 5 4 4 5 5 5 5 4 5 4 5 4 5 5 4 3 4 6 19 147